2UXB
crystal structure of an extended trna anticodon stem loop in complex with its cognate mrna gggu in the context of the thermus thermophilus 30s subunit.
Total interactions analyzed 276
Total true interactions 26
Strongest Interaction Chains J-N
Int. Res. 60
Norm. En. per Res. -4.6852
Hub Node C(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
B-C 0.0 0.0 -5.1863 -5.1863 9 1 0 294 0 1 3
B-E 0.0 0.0 -0.0178 -0.0178 3 0 0 13 0 0 2
B-H -11.5284 -34.3888 -65.2232 -111.1403 32 6 0 2861 2 17 18
C-D 0.0 0.0 -2.253 -2.253 6 0 0 141 0 0 7
C-E 0.0 -34.2629 -11.2611 -45.5241 14 2 0 703 2 5 4
C-J 0.0 -1.5357 -90.0556 -91.5914 61 17 2 3995 0 17 24
C-N -21.3905 9.5494 -200.464 -212.3051 73 12 3 9054 0 17 37
D-E 0.0 -43.7233 -54.6558 -98.3791 53 4 0 2748 4 6 10
E-H -23.7847 -29.6178 -134.68 -188.0825 60 9 2 6371 2 41 41
F-O 0.0 0.0 -1.8845 -1.8845 5 0 0 141 0 1 3
F-R -55.8736 -42.9787 -254.449 -353.3013 88 41 10 10799 2 13 23
G-I -6.9313 -0.2477 -41.6401 -48.819 36 3 5 2370 0 6 10
G-K 0.0 0.0 -37.4326 -37.4326 25 1 2 1689 0 1 4
G-U 0.0 0.0 -0.0138 -0.0138 2 0 0 10 0 1 0
H-L 0.0 0.0 -7.7787 -7.7787 9 0 0 444 0 0 1
H-Q 0.0 4.4726 -25.6038 -21.1313 15 0 0 1150 0 2 8
I-J 0.0 -1.0122 -38.146 -39.1581 18 3 0 1445 0 11 17
I-M -16.1972 5.624 -8.3015 -18.8748 6 1 0 400 0 0 4
I-N 0.0 0.0 -14.2102 -14.2102 10 0 0 524 0 0 1
J-N -34.1228 -31.3527 -215.637 -281.1124 60 29 6 8513 2 13 39
K-R -38.0099 -13.3941 -78.2686 -129.6726 37 17 2 3796 2 15 19
L-Q 0.0 0.0 -55.8902 -55.8902 22 3 4 2428 0 0 8
M-S -17.4749 10.8534 -68.0447 -74.6662 42 3 0 3374 0 8 23
M-U 0.0 0.0 -2.0807 -2.0807 9 0 0 295 0 4 10
N-S 0.0 0.0 -0.0723 -0.0723 4 0 0 27 0 1 2
O-Q 0.0 -1.2026 -0.124 -1.3266 9 0 0 60 0 7 6