2UU9
structure of the thermus thermophilus 30s ribosomal subunit complexed with a valine-asl with cmo5u in position 34 bound to an mrna with a gug-codon in the a-site and paromomycin.
Total interactions analyzed 276
Total true interactions 26
Strongest Interaction Chains J-N
Int. Res. 56
Norm. En. per Res. -6.0208
Hub Node C(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
B-C 0.0 0.0 -2.0596 -2.0596 5 0 0 159 0 2 5
B-E 0.0 0.0 -0.003 -0.003 7 0 0 6 0 0 2
B-H -16.4751 -40.2302 -73.3338 -130.0391 33 13 0 2785 2 17 18
C-D 0.0 0.8827 -0.2726 0.61 5 0 0 58 0 0 8
C-E 0.0 -18.9025 -14.3503 -33.2528 13 2 0 799 0 5 4
C-J 0.0 8.4256 -83.4475 -75.0219 55 7 2 3416 0 14 24
C-N -10.3674 4.4302 -216.295 -222.2323 76 9 3 9056 0 19 38
D-E -7.3032 -51.1064 -30.4593 -88.8689 35 6 0 1980 4 8 10
E-H -35.6086 -39.6927 -150.079 -225.3804 64 17 2 6423 2 43 43
F-O 0.0 0.0 -1.5618 -1.5618 5 0 0 160 0 2 2
F-R -83.0322 -33.0275 -285.219 -401.2787 90 34 8 10970 3 14 24
G-I 0.0 2.372 -21.2585 -18.8865 33 6 4 1808 0 5 8
G-K 0.0 0.0 -47.0132 -47.0132 28 3 3 2279 0 2 7
G-U 0.0 0.0 -0.0114 -0.0114 2 0 0 9 0 1 0
H-L 0.0 0.0 -8.8523 -8.8523 10 0 0 424 0 0 1
H-Q 0.0 4.2881 -23.0926 -18.8045 17 3 0 1347 0 2 8
I-J 0.0 -1.0462 -30.4677 -31.5139 17 1 0 1226 0 9 16
I-M 0.0 2.9094 -6.7469 -3.8375 6 2 0 332 0 0 3
I-N -10.4855 0.0 -16.0195 -26.505 8 1 0 538 0 0 0
J-N -62.4528 -53.1879 -221.522 -337.1627 56 27 7 8652 3 13 35
K-R -17.5308 -18.9768 -74.8256 -111.3332 36 2 2 3463 2 14 17
L-Q 0.0 0.0 -55.6998 -55.6998 22 1 4 2423 0 0 8
M-S -11.5487 19.3097 -79.6693 -71.9082 46 10 0 4156 0 8 24
M-U 0.0 2.6365 -2.9616 -0.3251 11 0 0 428 0 5 9
N-S 0.0 0.0 -0.2828 -0.2828 4 0 0 58 0 1 0
O-Q 0.0 0.0 -0.2497 -0.2497 11 0 0 83 0 6 6