2R6P

fit of e protein and fab 1a1d-2 into 24 angstrom resolution cryoem map of fab complexed with dengue 2 virus.

• Total interactions analyzed: 21
• Total true interactions: 6
• Strongest Interaction:
  • Chains: A-E
  • Int. Res.: 11
  • Norm. En. per Res.: -0.0946
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-D	0.0	0.0	-0.9405	-0.9405	17	0	0	254	0	0	0
A-E	0.0	0.0	-1.0402	-1.0402	11	0	0	191	0	0	0
C-F	0.0	0.0	-0.9054	-0.9054	18	0	0	237	0	0	0
C-G	0.0	0.0	-0.9897	-0.9897	12	0	0	179	0	0	0
D-E	0.0	0.0	-3.6431	-3.6431	84	0	0	998	0	0	0
F-G	0.0	0.0	-3.683	-3.683	86	0	0	1022	0	0	0

Interface residues

• A-D: ASN28D, ASP31D, ASP362A, ASP99D, GLU101D, GLU1D, GLY26D, LYS307A, LYS310A, PHE27D, PRO364A, SER363A, THR32D, TYR100D, TYR33D, VAL308A, VAL309A
• A-E: ASN34E, ASN390A, GLU327A, GLY33E, GLY385A, LEU389A, LYS388A, SER57E, SER60E, TRP391A, TYR32E
• C-F: ASN28F, ASP31F, ASP362C, ASP99F, GLU101F, GLU1F, GLY26F, LYS307C, LYS310C, PHE27F, PRO364C, SER363C, THR32F, TYR100F, TYR33F, VAL2F, VAL308C, VAL309C
• C-G: ASN34G, ASN390C, GLU327C, GLY33G, GLY385C, LEU389C, LYS388C, PHE392C, SER57G, SER60G, TRP391C, TYR32G
• D-E: ALA101E, ALA104D, ALA128D, ALA131D, ALA132D, ALA171D, ARG54E, ASN162E, ASP166E, ASP168E, ASP61D, ASP98E, GLN108D, GLN128E, GLN174D, GLN43D, GLN46E, GLN93E, GLN94E, GLU101D, GLU127E, GLU206E, GLU46D, GLY102D, GLY103E, GLY104E, GLY105E, GLY107D, GLY109D, GLY130D, GLY165D, GLY44D, GLY49D, HIS167D, HIS38E, ILE121E, ILE48D, ILE52E, LEU127D, LEU141D, LEU161E, LEU45D, LEU50E, LYS49E, LYS59D, MET37E, PHE102E, PHE103D, PHE122E, PHE169D, PHE202E, PHE36E, PHE95D, PRO123E, PRO124E, PRO126D, PRO129D, PRO170D, PRO47E, PRO48E, PRO62D, PRO99E, SER120E, SER125E, SER163E, SER169E, SER174E, SER181D, THR140D, THR165E, THR168D, THR95E, TRP100E, TRP106D, TRP164E, TRP39E, TRP47D, TYR100D, TYR125D, TYR53E, TYR60D, TYR91E, VAL166D, VAL172D
• F-G: ALA101G, ALA104F, ALA128F, ALA132F, ALA171F, ARG54G, ASN162G, ASP166G, ASP168G, ASP61F, ASP98G, GLN108F, GLN128G, GLN174F, GLN43F, GLN46G, GLU101F, GLU127G, GLU206G, GLU46F, GLU59G, GLY102F, GLY103G, GLY104G, GLY105G, GLY107F, GLY109F, GLY130F, GLY165F, GLY44F, GLY49F, HIS167F, HIS38G, ILE121G, ILE48F, ILE52G, LEU127F, LEU141F, LEU161G, LEU45F, LEU50G, LEU51G, LYS49G, LYS59F, MET173G, MET37G, PHE102G, PHE103F, PHE122G, PHE139G, PHE169F, PHE36G, PHE95F, PRO123G, PRO124G, PRO126F, PRO129F, PRO170F, PRO47G, PRO48G, PRO62F, PRO99G, SER120G, SER125G, SER163G, SER169G, SER172G, SER174G, SER181F, THR140F, THR165G, THR168F, THR89G, THR95G, TRP100G, TRP106F, TRP164G, TRP39G, TRP47F, TYR100F, TYR125F, TYR53G, TYR60F, TYR91G, VAL166F, VAL172F