2R6H

crystal structure of the domain comprising the nad binding and the fad binding regions of the nadh:ubiquinone oxidoreductase, na translocating, f subunit from porphyromonas gingivalis

• Total interactions analyzed: 6
• Total true interactions: 5
• Strongest Interaction:
  • Chains: B-D
  • Int. Res.: 69
  • Norm. En. per Res.: -3.0015
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-7.7019	16.589	-144.35	-135.4629	85	7	0	5721	0	46	54
A-C	-26.8738	-23.9118	-151.329	-202.1146	68	6	1	5838	4	27	24
A-D	0.0	7.309	-20.8375	-13.5285	18	2	0	862	0	8	9
B-D	-32.4927	-20.1718	-154.442	-207.1065	69	7	1	6031	5	27	23
C-D	-20.0699	16.8861	-160.226	-163.4098	91	13	0	6399	0	54	55

Interface residues

• A-B: ALA343A, ALA343B, ALA374A, ALA374B, ARG329A, ARG329B, ARG333A, ARG333B, ASN337B, ASN352A, ASN352B, ASN367A, ASN367B, ASP351A, ASP351B, ASP366A, ASP366B, ASP371A, ASP371B, ASP373A, ASP373B, GLN362A, GLN362B, GLU325A, GLU325B, GLU326A, GLU326B, GLU330A, GLU330B, GLU332A, GLU332B, GLU334A, GLU334B, GLY355A, GLY355B, GLY358A, GLY358B, HIS341A, HIS341B, HIS361A, HIS361B, HIS372A, HIS372B, ILE342A, ILE342B, ILE360A, ILE360B, ILE364A, ILE364B, LEU344A, LEU344B, LEU369A, LYS309A, LYS309B, LYS319A, LYS319B, LYS339A, LYS339B, LYS370A, LYS370B, PHE340A, PHE340B, PHE359A, PHE359B, PRO336A, PRO336B, PRO375A, PRO375B, SER311B, THR354A, THR354B, TRP313A, TRP313B, TRP353A, TRP353B, TYR356A, TYR356B, TYR365A, TYR365B, TYR368A, TYR368B, VAL357A, VAL357B, VAL363A, VAL363B
• A-C: ALA179A, ALA196A, ALA237A, ALA237C, ALA238A, ALA238C, ALA389C, ALA391C, ARG177A, ARG186A, ARG188A, ARG236A, ARG236C, ARG403C, ASN141A, ASN239A, ASN239C, ASN390C, ASN398C, ASP180A, ASP182A, ASP185A, ASP190A, ASP192A, ASP195A, ASP235A, ASP235C, ASP366C, ASP410C, GLN184A, GLN362C, GLU397C, GLY189A, GLY386C, GLY394C, GLY400C, HIS361C, ILE176A, ILE183A, LEU199A, LEU396C, LEU399C, LYS140A, LYS147A, LYS193A, LYS240A, LYS242C, LYS258A, LYS370C, LYS393C, PHE187A, PHE234A, PHE234C, PHE359C, PHE408C, PRO232C, PRO233C, PRO385C, PRO387C, SER198A, SER256A, THR200A, TRP191A, TRP197A, TYR178A, TYR181A, TYR365C, VAL392C
• A-D: ARG186A, ARG186D, ASN320A, ASN320D, ASN352A, ASN352D, ASP185D, ASP351A, ASP351D, GLN348A, GLN348D, GLU350A, GLU350D, GLY189A, LYS193A, LYS193D, PRO349A, PRO349D
• B-D: ALA179D, ALA196D, ALA237B, ALA237D, ALA238B, ALA238D, ALA243D, ALA389B, ALA391B, ARG177D, ARG186D, ARG188D, ARG236B, ARG236D, ARG403B, ASN141D, ASN239B, ASN239D, ASN390B, ASN398B, ASP180D, ASP182D, ASP185D, ASP190D, ASP192D, ASP195D, ASP235B, ASP235D, ASP366B, ASP410B, GLN184D, GLN362B, GLU397B, GLY189D, GLY386B, GLY394B, GLY400B, HIS361B, ILE176D, ILE183D, LEU199D, LEU369B, LEU396B, LEU399B, LEU406B, LYS140D, LYS147D, LYS193D, LYS240D, LYS242B, LYS258D, LYS370B, LYS393B, PHE187D, PHE234B, PHE234D, PHE359B, PHE408B, PRO233B, PRO385B, PRO387B, SER198D, THR200D, TRP191D, TRP197D, TYR178D, TYR181D, TYR365B, VAL392B
• C-D: ALA343C, ALA343D, ALA374C, ALA374D, ARG329C, ARG329D, ARG333C, ARG333D, ASN337C, ASN337D, ASN352C, ASN352D, ASN367C, ASN367D, ASP351C, ASP351D, ASP366C, ASP366D, ASP371C, ASP371D, ASP373C, ASP373D, GLN362C, GLN362D, GLU325C, GLU325D, GLU326C, GLU326D, GLU330C, GLU330D, GLU332C, GLU332D, GLU334C, GLU334D, GLY355C, GLY355D, GLY358C, GLY358D, HIS341C, HIS341D, HIS361C, HIS361D, HIS372C, HIS372D, ILE342C, ILE342D, ILE360C, ILE360D, ILE364C, ILE364D, LEU344C, LEU344D, LEU369C, LEU369D, LYS309C, LYS309D, LYS319C, LYS319D, LYS339C, LYS339D, LYS370C, LYS370D, PHE328C, PHE335C, PHE335D, PHE340C, PHE340D, PHE359C, PHE359D, PRO336C, PRO336D, PRO375C, PRO375D, SER311C, SER311D, THR354C, THR354D, TRP313C, TRP313D, TRP353C, TRP353D, TYR356C, TYR356D, TYR365C, TYR365D, TYR368C, TYR368D, VAL357C, VAL357D, VAL363C, VAL363D