2QTX

crystal structure of an hfq-like protein from methanococcus jannaschii

• Total interactions analyzed: 66
• Total true interactions: 28
• Strongest Interaction:
  • Chains: G-L
  • Int. Res.: 67
  • Norm. En. per Res.: -5.3482
• Hub Node: A(6)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-98.6646	-10.9162	-238.315	-347.8957	69	9	11	8684	2	20	22
A-C	0.0	0.0	-0.0025	-0.0025	3	0	0	3	0	2	5
A-E	0.0	0.0	-0.0028	-0.0028	3	0	0	4	0	2	5
A-F	-97.128	-16.9106	-242.347	-356.3857	68	11	11	8804	3	20	23
A-G	0.0	-5.6552	-1.4824	-7.1375	10	0	0	260	0	3	5
A-H	-4.1048	-8.7575	-35.083	-47.9452	27	0	0	1705	1	20	20
B-C	-80.8465	-6.6579	-238.15	-325.6544	68	11	11	8806	2	19	21
B-D	0.0	0.0	-0.0034	-0.0034	3	0	0	5	0	2	5
B-F	0.0	0.0	-0.002	-0.002	3	0	0	2	0	2	5
C-D	-85.291	-11.0667	-243.993	-340.3507	68	12	11	8768	2	20	23
C-E	0.0	0.0	-0.0025	-0.0025	3	0	0	4	0	2	5
D-E	-77.18	-13.9379	-237.81	-328.928	68	10	11	8805	2	20	22
D-F	0.0	0.0	-0.0032	-0.0032	3	0	0	5	0	2	5
E-F	-93.8323	-11.6236	-236.433	-341.8889	67	7	11	8794	2	18	24
F-G	0.0	0.0	-0.0098	-0.0098	4	0	0	10	0	0	0
F-H	0.0	-5.2834	-1.2846	-6.5679	9	0	0	233	0	3	5
G-H	-89.6555	-15.6127	-248.805	-354.0732	67	10	11	8891	2	18	22
G-I	0.0	0.0	-0.0028	-0.0028	3	0	0	5	0	2	5
G-K	0.0	0.0	-0.0026	-0.0026	3	0	0	4	0	2	5
G-L	-98.6281	-13.5253	-246.175	-358.3283	67	11	11	8885	2	20	24
H-I	-76.9747	-12.3837	-242.051	-331.4093	68	7	11	8834	2	19	22
H-J	0.0	0.0	-0.0023	-0.0023	3	0	0	2	0	2	5
H-L	0.0	0.0	-0.0028	-0.0028	3	0	0	4	0	2	5
I-J	-87.6085	-12.9898	-240.363	-340.9612	67	8	11	8726	2	19	21
I-K	0.0	0.0	-0.005	-0.005	3	0	0	5	0	2	5
J-K	-65.8921	-9.974	-242.195	-318.061	65	8	11	8674	2	20	22
J-L	0.0	0.0	-0.0026	-0.0026	3	0	0	4	0	2	5
K-L	-72.9316	-13.3762	-237.468	-323.7758	65	10	12	8771	2	21	22

Interface residues

• A-B: ALA20B, ALA65A, ALA65B, ARG21A, ARG21B, ARG22B, ARG33A, ARG33B, ARG57A, ASN16A, ASN16B, ASN24A, ASN34A, ASN34B, ASN47A, ASN47B, ASN58A, ASP56A, ASP67B, GLU18B, GLU36A, GLU49A, GLU70B, GLY35A, GLY35B, GLY44A, HIS64A, HIS64B, ILE14B, ILE30A, ILE30B, ILE50A, ILE50B, ILE66A, ILE66B, ILE69B, LEU23B, LEU32A, LEU32B, LEU38A, LEU59A, LEU60A, LYS26B, LYS29B, LYS53A, LYS63A, LYS63B, MET51A, PHE17B, PHE31B, PHE62A, PHE62B, PRO15B, SER46A, THR43A, TYR19B, TYR48A, TYR48B, TYR68B, TYR71B, VAL28B, VAL37A, VAL37B, VAL45A, VAL45B, VAL52A, VAL54A, VAL61A, VAL61B
• A-C: ARG33A, ARG33C, ASP67C
• A-E: ARG33A, ARG33E, ASP67A
• A-F: ALA20A, ALA65A, ALA65F, ARG21A, ARG21F, ARG22A, ARG33A, ARG33F, ARG57F, ASN16A, ASN16F, ASN24F, ASN34A, ASN34F, ASN47A, ASN47F, ASN58F, ASP56F, ASP67A, GLU18A, GLU36F, GLU49A, GLU49F, GLU70A, GLY35A, GLY35F, GLY44F, HIS64A, HIS64F, ILE30A, ILE30F, ILE50A, ILE50F, ILE66A, ILE66F, ILE69A, LEU23A, LEU32A, LEU32F, LEU38F, LEU59F, LEU60F, LYS29A, LYS53F, LYS63A, LYS63F, MET51F, PHE17A, PHE31A, PHE62A, PHE62F, PRO15A, SER46F, THR43F, TYR19A, TYR48A, TYR48F, TYR68A, TYR71A, VAL28A, VAL37A, VAL37F, VAL45A, VAL45F, VAL52F, VAL54F, VAL61A, VAL61F
• A-G: ARG22A, ARG57G, ASN58G, ASP56G, GLY55G, LYS26A, LYS53G, PHE17A, TYR19A, TYR71A
• A-H: ALA40A, ALA40H, ARG22A, ARG22H, ASN24A, ASN24H, ASP39A, GLU41A, GLU41H, GLU70A, GLU70H, GLY25A, GLY25H, LEU23A, LYS26A, LYS26H, LYS27A, LYS27H, LYS53A, THR43A, THR43H, TYR71A, TYR71H, VAL28A, VAL28H, VAL42A, VAL42H
• B-C: ALA20C, ALA65B, ALA65C, ARG21B, ARG21C, ARG22C, ARG33B, ARG33C, ARG57B, ASN16B, ASN16C, ASN24B, ASN34B, ASN34C, ASN47B, ASN47C, ASN58B, ASP56B, ASP67C, GLU18C, GLU36B, GLU49B, GLU49C, GLU70C, GLY35B, GLY35C, GLY44B, HIS64B, HIS64C, ILE30B, ILE30C, ILE50B, ILE50C, ILE66B, ILE66C, ILE69C, LEU23C, LEU32B, LEU32C, LEU38B, LEU59B, LEU60B, LYS26C, LYS29C, LYS53B, LYS63B, LYS63C, MET51B, PHE17C, PHE31C, PHE62B, PHE62C, PRO15C, SER46B, THR43B, TYR19C, TYR48B, TYR48C, TYR68C, TYR71C, VAL28C, VAL37C, VAL42B, VAL45B, VAL45C, VAL52B, VAL54B, VAL61B
• B-D: ARG33B, ARG33D, ASP67D
• B-F: ARG33B, ARG33F, ASP67B
• C-D: ALA20D, ALA65C, ALA65D, ARG21C, ARG21D, ARG22D, ARG33C, ARG33D, ARG57C, ASN16D, ASN24C, ASN34C, ASN34D, ASN47C, ASN47D, ASN58C, ASP56C, ASP67D, GLU18D, GLU36C, GLU49C, GLU49D, GLU70D, GLY35C, GLY35D, GLY44C, HIS64C, HIS64D, ILE30C, ILE30D, ILE50C, ILE50D, ILE66C, ILE66D, ILE69D, LEU23D, LEU32C, LEU32D, LEU38C, LEU59C, LEU60C, LYS26D, LYS29D, LYS53C, LYS63C, LYS63D, MET51C, PHE17D, PHE31D, PHE62C, PHE62D, SER46C, THR43C, TYR19D, TYR48C, TYR48D, TYR68D, TYR71D, VAL28D, VAL37D, VAL42C, VAL42D, VAL45C, VAL45D, VAL52C, VAL54C, VAL61C, VAL61D
• C-E: ARG33C, ARG33E, ASP67E
• D-E: ALA20E, ALA65D, ALA65E, ARG21D, ARG21E, ARG22E, ARG33D, ARG33E, ARG57D, ASN16D, ASN16E, ASN24D, ASN34D, ASN34E, ASN47D, ASN47E, ASN58D, ASP56D, ASP67E, GLU18E, GLU36D, GLU49D, GLU70E, GLY35D, GLY35E, GLY44D, HIS64D, HIS64E, ILE30D, ILE30E, ILE50D, ILE50E, ILE66D, ILE66E, ILE69E, LEU23E, LEU32D, LEU32E, LEU38D, LEU59D, LEU60D, LYS29E, LYS53D, LYS63D, LYS63E, MET51D, PHE17E, PHE31E, PHE62D, PHE62E, PRO15E, SER46D, THR43D, TYR19E, TYR48D, TYR48E, TYR68E, TYR71E, VAL28E, VAL37E, VAL42D, VAL42E, VAL45D, VAL45E, VAL52D, VAL54D, VAL61D, VAL61E
• D-F: ARG33D, ARG33F, ASP67F
• E-F: ALA20F, ALA65E, ALA65F, ARG21E, ARG21F, ARG22F, ARG33E, ARG33F, ARG57E, ASN16F, ASN24E, ASN34E, ASN34F, ASN47E, ASN47F, ASN58E, ASP56E, ASP67F, GLU18F, GLU36E, GLU49E, GLU49F, GLU70F, GLY35E, GLY35F, GLY44E, HIS64E, HIS64F, ILE30E, ILE30F, ILE50E, ILE50F, ILE66E, ILE66F, ILE69F, LEU23F, LEU32E, LEU32F, LEU38E, LEU59E, LEU60E, LYS26F, LYS29F, LYS53E, LYS63E, LYS63F, MET51E, PHE17F, PHE31F, PHE62E, PHE62F, SER46E, THR43E, TYR19F, TYR48E, TYR48F, TYR68F, TYR71F, VAL28F, VAL37F, VAL42F, VAL45E, VAL45F, VAL52E, VAL54E, VAL61E, VAL61F
• F-G: ASN58F, ASN58G, LYS53F, THR43G
• F-H: ARG22H, ARG57F, ASN58F, ASP56F, GLY55F, LYS26H, LYS53F, TYR19H, TYR71H
• G-H: ALA20H, ALA65G, ALA65H, ARG21H, ARG22H, ARG33G, ARG33H, ARG57G, ASN16G, ASN16H, ASN24G, ASN34G, ASN34H, ASN47G, ASN47H, ASN58G, ASP56G, ASP67H, GLU18H, GLU36G, GLU49G, GLU70H, GLY35G, GLY35H, GLY44G, HIS64G, HIS64H, ILE30G, ILE30H, ILE50G, ILE50H, ILE66G, ILE66H, ILE69H, LEU23H, LEU32G, LEU32H, LEU38G, LEU59G, LEU60G, LYS29H, LYS53G, LYS63G, LYS63H, MET51G, PHE17H, PHE31H, PHE62G, PHE62H, PRO15G, PRO15H, SER46G, THR43G, TYR19H, TYR48G, TYR48H, TYR68H, TYR71H, VAL28H, VAL37H, VAL42G, VAL45G, VAL45H, VAL52G, VAL54G, VAL61G, VAL61H
• G-I: ARG33G, ARG33I, ASP67I
• G-K: ARG33G, ARG33K, ASP67G
• G-L: ALA20G, ALA65G, ALA65L, ARG21G, ARG21L, ARG22G, ARG33G, ARG33L, ARG57L, ASN16G, ASN24L, ASN34G, ASN34L, ASN47G, ASN47L, ASN58L, ASP56L, ASP67G, GLU18G, GLU36L, GLU49L, GLU70G, GLY35G, GLY35L, GLY44L, HIS64G, HIS64L, ILE30G, ILE30L, ILE50G, ILE50L, ILE66G, ILE66L, ILE69G, LEU23G, LEU32G, LEU32L, LEU38L, LEU59L, LEU60L, LYS26G, LYS29G, LYS53L, LYS63G, LYS63L, MET51L, PHE17G, PHE31G, PHE62G, PHE62L, PRO15G, SER46L, THR43L, TYR19G, TYR48G, TYR48L, TYR68G, TYR71G, VAL28G, VAL37G, VAL42L, VAL45G, VAL45L, VAL52L, VAL54L, VAL61G, VAL61L
• H-I: ALA20I, ALA65H, ALA65I, ARG21H, ARG21I, ARG22I, ARG33H, ARG33I, ARG57H, ASN16I, ASN24H, ASN34H, ASN34I, ASN47H, ASN47I, ASN58H, ASP56H, ASP67I, GLU18I, GLU36H, GLU49H, GLU49I, GLU70I, GLY35H, GLY35I, GLY44H, HIS64H, HIS64I, ILE30H, ILE30I, ILE50H, ILE50I, ILE66H, ILE66I, ILE69I, LEU23I, LEU32H, LEU32I, LEU38H, LEU59H, LEU60H, LYS26I, LYS29I, LYS53H, LYS63H, LYS63I, MET51H, PHE17I, PHE31I, PHE62H, PHE62I, PRO15I, SER46H, THR43H, TYR19I, TYR48H, TYR48I, TYR68I, TYR71I, VAL28I, VAL37I, VAL42H, VAL45H, VAL45I, VAL52H, VAL54H, VAL61H, VAL61I
• H-J: ARG33H, ARG33J, ASP67J
• H-L: ARG33H, ARG33L, ASP67H
• I-J: ALA20J, ALA65I, ALA65J, ARG21I, ARG21J, ARG22J, ARG33I, ARG33J, ARG57I, ASN16I, ASN24I, ASN34I, ASN34J, ASN47I, ASN47J, ASN58I, ASP56I, ASP67J, GLU18J, GLU36I, GLU49I, GLU49J, GLU70J, GLY35I, GLY35J, GLY44I, HIS64I, HIS64J, ILE30I, ILE30J, ILE50I, ILE50J, ILE66I, ILE66J, ILE69J, LEU23J, LEU32I, LEU32J, LEU38I, LEU59I, LEU60I, LYS26J, LYS29J, LYS53I, LYS63I, LYS63J, MET51I, PHE17J, PHE31J, PHE62I, PHE62J, PRO15J, SER46I, THR43I, TYR19J, TYR48I, TYR48J, TYR68J, TYR71J, VAL28J, VAL37J, VAL42J, VAL45I, VAL45J, VAL52I, VAL54I, VAL61I
• I-K: ARG33I, ARG33K, ASP67K
• J-K: ALA20K, ALA65J, ALA65K, ARG21J, ARG21K, ARG22K, ARG33J, ARG33K, ARG57J, ASN16K, ASN24J, ASN34J, ASN34K, ASN47J, ASN47K, ASN58J, ASP56J, ASP67K, GLU18K, GLU36J, GLU49J, GLU70K, GLY35J, GLY35K, GLY44J, HIS64J, HIS64K, ILE30J, ILE30K, ILE50J, ILE50K, ILE66J, ILE66K, ILE69K, LEU23K, LEU32J, LEU32K, LEU38J, LEU59J, LEU60J, LYS26K, LYS29K, LYS53J, LYS63J, LYS63K, MET51J, PHE17K, PHE31K, PHE62J, PHE62K, SER46J, THR43J, TYR19K, TYR48J, TYR48K, TYR68K, TYR71K, VAL28K, VAL42K, VAL45J, VAL45K, VAL52J, VAL54J, VAL61J, VAL61K
• J-L: ARG33J, ARG33L, ASP67L
• K-L: ALA20L, ALA65K, ALA65L, ARG21K, ARG21L, ARG22L, ARG33K, ARG33L, ARG57K, ASN16K, ASN16L, ASN24K, ASN34K, ASN34L, ASN47K, ASN47L, ASN58K, ASP56K, ASP67L, GLU18L, GLU36K, GLU49K, GLU70L, GLY35L, GLY44K, HIS64K, HIS64L, ILE30K, ILE30L, ILE50K, ILE50L, ILE66K, ILE66L, ILE69L, LEU23L, LEU32K, LEU32L, LEU38K, LEU59K, LEU60K, LYS29L, LYS53K, LYS63K, LYS63L, MET51K, PHE17L, PHE31L, PHE62K, PHE62L, PRO15L, SER46K, THR43K, TYR19L, TYR48K, TYR48L, TYR68L, TYR71L, VAL28L, VAL37L, VAL45K, VAL45L, VAL52K, VAL54K, VAL61K, VAL61L