2QOW
crystal structure of the bacterial ribosome from escherichia coli in complex with spectinomycin. this file contains the 30s subunit of the second 70s ribosome, with spectinomycin bound. the entire crystal structure contains two 70s ribosomes.
Total interactions analyzed 210
Total true interactions 24
Strongest Interaction Chains J-N
Int. Res. 54
Norm. En. per Res. -4.5575
Hub Node C(3)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
D-E -10.7191 -50.7732 -46.6049 -108.0972 44 5 0 2489 4 14 13
D-P 0.0 0.0 -0.0003 -0.0003 2 0 0 1 0 0 1
E-H -25.8446 -35.5727 -143.407 -204.8243 53 18 1 6038 3 17 14
E-C 0.0 0.0 -1.7399 -1.7399 13 0 0 253 0 6 6
E-B 0.0 0.0 -0.4823 -0.4823 7 0 0 77 0 2 4
F-R -22.7534 11.8281 -144.219 -155.1443 61 25 4 6523 0 15 21
H-L 0.0 0.0 -3.9663 -3.9663 7 0 1 377 0 0 0
H-Q 0.0 2.9457 -19.6913 -16.7457 16 1 0 1026 0 4 8
H-B 0.0 0.0 -0.1039 -0.1039 6 0 0 49 0 1 2
K-R 0.0 -4.065 -8.2115 -12.2765 16 0 0 748 0 5 11
K-U -31.2056 2.885 -213.912 -242.2327 74 35 3 10496 3 35 41
K-G 0.0 0.0 -30.2571 -30.2571 29 4 2 1430 0 3 3
L-Q 0.0 0.0 -41.353 -41.353 21 5 3 1817 0 0 8
Q-O 0.0 0.0 -5.4855 -5.4855 7 0 1 372 0 1 0
R-U 0.0 -8.8494 -38.0625 -46.9119 19 4 0 2253 0 16 14
C-J 0.0 0.0 -45.7758 -45.7758 56 3 2 2708 0 12 7
C-N -14.4749 -42.2449 -204.208 -260.9278 78 13 4 8752 2 33 35
C-B 0.0 0.0 -0.0014 -0.0014 2 0 0 1 0 0 0
G-I 0.0 0.0 -4.1219 -4.1219 23 0 0 507 0 7 8
I-J 0.0 -7.6848 -15.4375 -23.1223 21 1 0 1117 0 8 12
I-N 0.0 0.0 -22.4518 -22.4518 7 1 0 511 0 0 0
J-N -16.4195 -26.8272 -202.857 -246.1037 54 24 5 8183 2 18 26
M-S 0.0 -21.0783 -82.937 -104.0153 44 12 0 3712 3 13 22
N-S -6.6221 1.0446 -57.2178 -62.7953 31 6 1 2976 0 5 10