2QEX
negamycin binds to the wall of the nascent chain exit tunnel of the 50s ribosomal subunit
Total interactions analyzed 465
Total true interactions 27
Strongest Interaction Chains A-Z
Int. Res. 107
Norm. En. per Res. -3.7597
Hub Node C(5)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-M 0.0 0.0 -0.2192 -0.2192 4 0 0 52 0 0 3
A-Z -95.1894 -22.1815 -284.92 -402.2909 107 12 6 12255 2 25 23
B-J -14.2577 -22.5804 -44.2154 -81.0535 33 1 0 1866 1 3 0
B-K 0.0 13.6686 -50.0934 -36.4248 40 3 0 2447 0 10 18
B-U -14.2772 6.2251 -40.7432 -48.7953 23 2 0 1302 0 4 5
C-L 0.0 0.0 -0.0032 -0.0032 2 0 0 5 0 0 3
C-O 0.0 6.1417 -40.095 -33.9533 19 3 0 1552 0 6 5
C-T 0.0 0.8685 -13.3995 -12.531 14 0 0 783 0 3 10
C-Y 0.0 0.0 -0.0033 -0.0033 2 0 0 4 0 0 1
C-1 0.0 -11.8163 -42.7363 -54.5526 16 1 0 1399 1 5 6
D-N -13.7669 -1.231 -41.0233 -56.0212 27 10 1 2144 0 10 20
E-J -12.9618 8.7094 -61.228 -65.4805 25 1 1 2291 0 7 7
F-M -27.0502 -10.99 -165.93 -203.9701 68 9 3 7455 4 23 26
H-Q 0.0 0.0 -0.0176 -0.0176 3 0 0 8 0 0 0
K-U -44.8314 -3.9097 -131.738 -180.4791 52 7 3 5486 1 17 19
L-M 0.0 0.0 -0.0147 -0.0147 2 0 0 11 0 0 1
L-O 0.0 0.0 -10.6419 -10.6419 25 0 0 885 0 5 5
L-Y 0.0 0.0 -10.3012 -10.3012 13 0 0 374 0 0 12
L-3 0.0 0.0 -3.8722 -3.8722 5 0 0 173 0 0 2
M-3 0.0 -2.196 -32.5273 -34.7233 19 1 0 1578 0 4 1
N-Q 0.0 2.5987 -81.3913 -78.7926 53 3 2 4554 0 10 14
R-X 0.0 0.0 -0.0605 -0.0605 2 0 0 6 0 0 6
R-2 0.0 0.0 -0.1065 -0.1065 3 0 0 33 0 0 1
S-V -6.4835 -9.3005 -52.1744 -67.9583 37 2 3 2712 1 11 12
S-2 -20.0539 -6.2162 -44.2418 -70.5118 26 2 0 2165 0 19 11
T-2 0.0 0.0 -0.0373 -0.0373 2 0 0 7 0 2 2
1-2 0.0 -1.62 -35.2841 -36.9041 21 3 0 1548 0 18 15