2QBF
crystal structure of the bacterial ribosome from escherichia coli in complex with ribosome recycling factor (rrf). this file contains the 30s subunit of the second 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400.
Total interactions analyzed 210
Total true interactions 24
Strongest Interaction Chains J-N
Int. Res. 54
Norm. En. per Res. -4.8311
Hub Node C(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
C-D 0.0 0.0 -0.0093 -0.0093 3 0 0 7 0 0 0
C-E 0.0 0.0 -5.0741 -5.0741 15 0 0 374 1 7 6
C-J 0.0 0.0 -77.3027 -77.3027 61 1 2 3018 0 12 7
C-N -7.4933 -49.3914 -231.265 -288.1496 76 6 4 9310 3 37 35
D-E -9.8522 -27.5284 -29.5686 -66.9492 49 5 0 2429 1 12 14
D-P 0.0 0.0 -0.0003 -0.0003 2 0 0 1 0 0 0
E-H -19.5346 -27.169 -127.591 -174.2947 54 16 2 5856 2 17 13
E-B 0.0 0.0 -0.9687 -0.9687 6 0 0 79 0 2 3
F-R -43.6256 7.562 -169.124 -205.1875 60 24 4 6362 0 12 23
G-I 0.0 0.0 -5.0593 -5.0593 22 0 0 510 0 8 6
G-K 0.0 0.8716 -26.5533 -25.6817 29 2 2 1423 0 3 3
H-L 0.0 0.0 -7.3469 -7.3469 9 0 1 386 0 0 0
H-Q 0.0 0.0 -26.7841 -26.7841 18 1 0 1239 0 4 7
H-B 0.0 0.0 -0.0529 -0.0529 5 0 0 27 0 1 2
I-J 0.0 -6.1144 -19.7594 -25.8738 20 4 0 1204 0 9 13
I-N 0.0 0.0 -17.3657 -17.3657 7 3 0 520 0 0 1
J-N -20.7423 -35.1242 -205.014 -260.8806 54 22 5 8188 2 18 26
K-R -8.0211 -6.5681 -19.327 -33.9161 20 4 0 1021 0 6 10
K-U -43.2815 13.336 -210.585 -240.5305 77 41 2 10830 2 36 43
L-Q -2.188 0.0 -44.1539 -46.3419 22 3 4 1965 0 0 8
M-S -12.5383 3.5618 -74.4648 -83.4413 45 6 0 3527 0 13 22
N-S 0.0 6.0284 -30.7397 -24.7113 32 6 0 2235 0 5 9
O-Q 0.0 0.0 -4.7355 -4.7355 8 0 0 315 0 1 0
R-U -3.5843 -16.8078 -37.5517 -57.9438 21 1 0 1712 2 16 12