2QBE
crystal structure of the bacterial ribosome from escherichia coli in complex with ribosome recycling factor (rrf). this file contains the 50s subunit of the first 70s ribosome, with rrf bound. the entire crystal structure contains two 70s ribosomes and is described in remark 400.
Total interactions analyzed 496
Total true interactions 30
Strongest Interaction Chains K-P
Int. Res. 79
Norm. En. per Res. -4.2825
Hub Node D(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
Download
Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
I-6 0.0 0.0 -0.0003 -0.0003 2 0 0 1 0 0 0
D-K -9.2418 -5.5271 -26.5259 -41.2948 18 4 0 1080 0 2 5
D-P 0.0 7.9101 -148.493 -140.5829 60 11 4 6570 2 12 13
D-J 0.0 4.5017 -17.5138 -13.0121 11 0 1 752 0 0 6
D-N -8.0767 2.4849 -28.6536 -34.2455 15 9 0 1224 0 0 9
K-P -81.2687 -65.7309 -191.32 -338.3196 79 25 2 7519 2 33 35
E-2 0.0 0.0 -0.0003 -0.0003 2 0 0 1 0 0 0
E-L 0.0 0.0 -110.587 -110.587 48 14 4 6005 0 8 7
E-Q 0.0 0.0 -0.2577 -0.2577 6 0 0 83 0 0 2
0-N -3.6209 3.554 -70.9225 -70.9895 41 6 6 3506 0 13 19
0-Q 0.0 15.3495 -19.0714 -3.7219 14 2 0 753 0 0 5
0-S -4.1266 -14.2017 -85.0902 -103.4185 49 2 8 3907 2 10 7
4-M 0.0 0.0 -0.2486 -0.2486 3 0 0 63 0 0 1
4-G 0.0 -6.0829 -5.5151 -11.598 11 0 0 378 0 2 3
1-3 0.0 1.028 -27.0386 -26.0106 18 2 0 1111 0 1 6
3-L -13.4268 31.3051 -199.224 -181.3457 61 9 5 8291 0 3 33
3-W 0.0 0.0 -0.0149 -0.0149 2 0 0 10 0 2 2
V-M 0.0 -6.8907 -85.104 -91.9947 52 9 4 3841 0 5 12
2-T 0.0 0.0 -0.0094 -0.0094 4 0 0 11 0 1 4
L-Q 0.0 0.0 -0.0049 -0.0049 8 0 0 7 0 0 2
L-R 0.0 2.8517 -35.1206 -32.2689 23 2 0 1332 0 0 12
M-W 0.0 0.0 -0.0323 -0.0323 5 0 0 26 0 0 0
M-6 0.0 -9.415 -0.7137 -10.1286 11 0 0 191 0 9 5
X-T 0.0 11.6133 -79.2321 -67.6188 46 15 2 4075 0 10 15
H-Z 0.0 -15.4534 -39.2102 -54.6636 34 6 0 2115 0 8 12
J-Q 0.0 -1.1198 -73.4057 -74.5255 42 10 6 4217 0 9 22
J-R 0.0 0.0 -5.0065 -5.0065 11 0 0 537 0 0 4
N-S -9.1214 0.0 -14.254 -23.3754 15 4 0 483 0 2 2
O-W 0.0 -4.0958 -3.8607 -7.9565 19 0 0 321 0 3 7
Q-R -34.9774 -10.1985 -231.738 -276.9139 101 51 6 11036 2 25 53