2QBD
crystal structure of the bacterial ribosome from escherichia coli in complex with ribosome recycling factor (rrf). this file contains the 30s subunit of the first 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400.
Total interactions analyzed 210
Total true interactions 24
Strongest Interaction Chains J-N
Int. Res. 54
Norm. En. per Res. -4.8471
Hub Node C(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
C-D 0.0 0.0 -0.9862 -0.9862 3 0 0 76 0 0 2
C-E 0.0 -32.9704 -8.8059 -41.7763 15 0 0 504 2 7 6
C-J 0.0 0.0 -77.1386 -77.1386 61 1 3 3017 0 12 7
C-N -7.3633 -49.3323 -229.911 -286.6066 76 4 4 9300 3 37 35
D-E -9.8338 -26.8885 -29.0097 -65.732 50 5 0 2428 1 12 14
D-P 0.0 0.0 -0.0003 -0.0003 2 0 0 1 0 0 0
E-H -19.9651 -27.3743 -126.177 -173.5163 54 14 2 5862 2 17 12
E-B 0.0 0.0 -0.9719 -0.9719 6 0 0 80 0 2 3
F-R -34.4714 7.587 -172.256 -199.1404 61 23 4 6389 0 12 23
G-I 0.0 0.0 -4.6665 -4.6665 21 0 0 499 0 8 6
G-K -14.9755 0.0 -31.8374 -46.8129 22 15 2 1933 0 2 4
H-L 0.0 0.0 -7.2224 -7.2224 9 0 1 385 0 0 0
H-Q 0.0 0.0 -26.7774 -26.7774 18 1 0 1233 0 4 7
H-B 0.0 0.0 -0.0563 -0.0563 5 0 0 30 0 1 2
I-J 0.0 -6.1444 -19.845 -25.9894 20 5 0 1206 0 9 13
I-N 0.0 0.0 -14.0809 -14.0809 7 3 0 518 0 0 1
J-N -20.853 -35.0282 -205.864 -261.7452 54 22 5 8217 2 18 26
K-R -8.1614 -6.5282 -18.8815 -33.571 20 4 0 1020 0 6 10
K-U -42.0716 12.1688 -205.349 -235.2518 77 42 2 10845 2 36 43
L-Q -2.3428 0.0 -44.8691 -47.2119 22 2 4 1979 0 0 8
M-S -12.334 -2.3847 -83.953 -98.6717 44 14 0 3989 0 13 21
N-S 0.0 6.0099 -31.2202 -25.2102 33 6 0 2242 0 5 9
O-Q 0.0 0.0 -1.6662 -1.6662 4 0 0 223 0 1 0
R-U -2.992 -16.113 -37.7145 -56.8194 21 1 0 1705 2 16 12