2QBB
crystal structure of the bacterial ribosome from escherichia coli in complex with gentamicin. this file contains the 30s subunit of the second 70s ribosome, with gentamicin bound. the entire crystal structure contains two 70s ribosomes and is described in remark 400.
Total interactions analyzed 210
Total true interactions 22
Strongest Interaction Chains J-N
Int. Res. 55
Norm. En. per Res. -4.7453
Hub Node C(3)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
C-E -8.8212 0.0 -9.279 -18.1001 14 1 0 556 1 6 6
C-J 0.0 0.0 -63.3709 -63.3709 61 1 3 2896 0 9 7
C-N -15.7932 -63.4564 -231.353 -310.6026 76 12 4 9199 3 33 34
D-E -6.5652 -35.4272 -47.2097 -89.2021 48 3 0 2369 2 13 13
E-H -6.202 -19.976 -127.056 -153.2339 52 16 2 5620 2 16 13
E-B 0.0 0.0 -0.0507 -0.0507 5 0 0 22 0 2 3
F-R -46.4119 11.144 -157.509 -192.7769 59 34 4 6291 0 12 20
G-I 0.0 0.0 -4.6916 -4.6916 20 0 0 482 0 7 9
G-K 0.0 0.0 -20.6487 -20.6487 26 1 2 1260 0 4 2
H-L 0.0 0.0 -4.1915 -4.1915 7 0 1 347 0 0 0
H-Q 0.0 0.0 -19.3695 -19.3695 17 0 0 1159 0 3 7
H-B 0.0 0.0 -0.0505 -0.0505 7 0 0 32 0 1 2
I-J 0.0 0.0 -17.793 -17.793 20 1 0 1104 0 8 12
I-N 0.0 0.0 -24.3574 -24.3574 7 0 0 520 0 0 1
J-N -23.3865 -30.2718 -207.331 -260.9894 55 24 6 8227 1 19 27
K-R -4.0689 -9.4586 -17.192 -30.7195 19 0 0 1006 0 6 11
K-U -48.9937 -3.8854 -213.914 -266.7931 83 53 5 11286 2 36 41
L-Q 0.0 0.0 -45.7415 -45.7415 21 4 4 1976 0 0 7
M-S -7.5803 -11.5164 -59.6641 -78.7608 45 9 0 3121 1 12 21
N-S -2.6152 2.5946 -59.6434 -59.664 31 12 1 3091 0 5 11
O-Q 0.0 0.0 -6.0411 -6.0411 9 0 1 387 0 0 0
R-U -5.9146 -43.9209 -39.4604 -89.2959 21 7 0 2114 3 15 13