2QB9
crystal structure of the bacterial ribosome from escherichia coli in complex with gentamicin. this file contains the 30s subunit of the first 70s ribosome, with gentamicin bound. the entire crystal structure contains two 70s ribosomes and is described in remark 400.
Total interactions analyzed 210
Total true interactions 23
Strongest Interaction Chains J-N
Int. Res. 54
Norm. En. per Res. -4.7969
Hub Node C(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
Download
Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
C-D 0.0 0.0 -0.0038 -0.0038 3 0 0 5 0 0 2
C-E -4.1843 -35.1156 -11.9082 -51.2081 16 1 0 730 1 7 6
C-J 0.0 0.0 -63.4844 -63.4844 61 1 3 2920 0 9 7
C-N -15.7682 -64.3782 -231.769 -311.9154 75 13 4 9193 3 33 34
D-E -6.7498 -35.0555 -48.1516 -89.9569 49 2 0 2400 2 13 13
E-H -9.229 -19.2627 -129.456 -157.9476 52 17 2 5606 1 16 14
E-B 0.0 0.0 -0.0537 -0.0537 5 0 0 23 0 2 3
F-R -29.3446 11.1553 -157.401 -175.5903 59 32 4 6325 0 12 19
G-I 0.0 0.0 -4.5952 -4.5952 20 0 0 470 0 7 9
G-K -16.7407 2.248 -27.3845 -41.8772 23 11 1 1677 0 2 4
H-L 0.0 0.0 -4.2078 -4.2078 7 0 1 353 0 0 0
H-Q 0.0 0.0 -19.2815 -19.2815 17 0 0 1148 0 3 7
H-B 0.0 0.0 -0.0519 -0.0519 7 0 0 33 0 1 2
I-J 0.0 0.0 -17.8861 -17.8861 20 1 0 1108 0 8 12
I-N 0.0 0.0 -24.3879 -24.3879 6 0 0 517 0 0 1
J-N -23.1552 -30.0402 -205.835 -259.0304 54 23 6 8258 1 19 27
K-R -3.9848 -9.4704 -17.2462 -30.7014 19 0 0 1007 0 6 11
K-U -48.0193 -5.2923 -206.348 -259.6595 83 58 5 11272 2 36 41
L-Q 0.0 0.0 -45.6669 -45.6669 21 4 4 1980 0 0 7
M-S -7.3882 -16.9916 -65.6385 -90.0183 43 10 0 3390 1 12 20
N-S -6.0416 2.5412 -59.5626 -63.063 31 13 1 3106 0 5 11
O-Q 0.0 0.0 -1.5137 -1.5137 6 0 1 191 0 0 0
R-U -6.013 -44.9201 -38.0643 -88.9975 21 8 0 2095 3 15 13