2QAL
crystal structure of the bacterial ribosome from escherichia coli in complex with neomycin. this file contains the 30s subunit of the first 70s ribosome, with neomycin bound. the entire crystal structure contains two 70s ribosomes and is described in remark 400.
Total interactions analyzed 210
Total true interactions 24
Strongest Interaction Chains J-N
Int. Res. 56
Norm. En. per Res. -4.8395
Hub Node C(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
C-D 0.0 0.0 -0.0578 -0.0578 2 0 0 19 0 0 2
C-E -7.106 -38.3556 -9.6445 -55.1061 19 1 0 582 3 7 7
C-J 0.0 0.0 -62.4856 -62.4856 57 0 3 2853 0 10 7
C-N -11.8059 -48.4807 -229.591 -289.8776 77 13 3 9434 3 36 32
D-E -13.4628 -38.5491 -45.7233 -97.7353 46 6 0 2337 2 13 14
D-P 0.0 0.0 -0.0003 -0.0003 2 0 0 1 0 0 0
E-H -10.9671 -26.0897 -142.134 -179.1909 51 20 2 5786 1 16 13
E-B 0.0 0.0 -0.4993 -0.4993 7 0 0 53 0 2 2
F-R -22.1751 -22.0961 -162.989 -207.2602 59 16 4 6718 2 11 19
G-I 0.0 0.0 -4.0065 -4.0065 19 0 0 470 0 8 7
G-K -15.8479 2.1808 -29.3294 -42.9964 23 10 2 1908 0 2 4
H-L 0.0 0.0 -4.1377 -4.1377 8 0 1 319 0 0 0
H-Q 0.0 0.0 -20.1369 -20.1369 16 0 0 1094 0 3 7
H-B 0.0 0.0 -0.0194 -0.0194 7 0 0 21 0 1 2
I-J 0.0 0.0 -15.7561 -15.7561 20 0 0 995 0 8 11
I-N 0.0 0.0 -22.4163 -22.4163 7 0 0 526 0 0 1
J-N -21.018 -39.6282 -210.367 -271.0132 56 25 5 8118 2 16 27
K-R -8.7647 -7.6225 -21.059 -37.4462 21 2 0 1069 0 6 10
K-U -56.7479 21.1525 -193.515 -229.1105 77 44 5 10908 2 35 39
L-Q 0.0 0.0 -47.2938 -47.2938 20 3 4 2025 0 0 8
M-S -10.2886 -8.1915 -70.5371 -89.0172 39 8 0 3523 0 13 20
N-S -7.0496 3.4727 -25.2175 -28.7944 31 12 0 2490 0 5 10
O-Q 0.0 0.0 -3.7097 -3.7097 7 0 1 276 0 1 0
R-U -3.2448 -32.4248 -32.617 -68.2866 19 5 0 1822 2 15 13