2PPB
crystal structure of the t. thermophilus rnap polymerase elongation complex with the ntp substrate analog and antibiotic streptolydigin
Total interactions analyzed 120
Total true interactions 19
Strongest Interaction Chains M-N
Int. Res. 765
Norm. En. per Res. -3.8752
Hub Node A(3)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -12.3058 2.1069 -385.305 -395.5039 142 48 16 17411 0 28 33
A-C -73.694 -177.3763 -393.538 -644.6083 195 27 6 19313 13 119 103
A-D 0.0 3.2126 -1.0669 2.1458 8 0 0 140 0 7 5
B-C -5.9562 -82.1026 -37.2771 -125.3359 34 2 0 1833 5 17 19
B-D -12.9313 -77.6289 -217.686 -308.2462 126 15 9 10348 8 60 53
C-D -365.0273 -239.9024 -2390.35 -2995.2798 776 284 77 103178 29 314 268
C-E 0.0 -30.0373 -22.292 -52.3293 29 3 0 967 1 10 8
D-E -90.9427 -48.3565 -533.394 -672.6931 176 68 21 24831 9 69 57
D-M -8.3208 10.6587 -50.3093 -47.9714 43 5 2 2495 0 21 14
D-N -65.383 -30.2487 -493.353 -588.9846 202 123 3 19988 10 131 108
K-L -5.4852 13.6413 -426.597 -418.4409 149 55 17 18427 0 29 34
K-M -51.217 -143.956 -414.739 -609.912 196 33 7 20145 14 118 101
K-N 0.0 2.473 -0.7127 1.7603 8 0 0 113 0 7 5
L-M -8.9467 -63.2513 -36.0526 -108.2507 33 0 0 1747 3 15 18
L-N -18.0592 -108.7207 -199.264 -326.0439 127 19 8 9809 9 53 45
L-O 0.0 0.0 -0.0148 -0.0148 2 0 0 12 0 0 0
M-N -323.5895 -310.2166 -2330.73 -2964.5361 765 269 81 102828 35 303 274
M-O 0.0 -23.055 -26.7391 -49.794 30 1 0 1326 0 11 10
N-O -81.9688 -17.7964 -553.029 -652.7942 179 83 24 26333 3 73 58