2PDR

1.7 angstrom crystal structure of the photo-excited blue- light photoreceptor vivid

• Total interactions analyzed: 6
• Total true interactions: 4
• Strongest Interaction:
  • Chains: B-C
  • Int. Res.: 44
  • Norm. En. per Res.: -2.5937
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	0.0	0.0	-10.3033	-10.3033	15	0	0	683	0	1	3
A-D	-5.1903	0.0	-96.8692	-102.0595	45	12	3	4254	0	4	6
B-C	-7.2575	0.0	-106.864	-114.1215	44	7	3	4137	0	4	6
C-D	0.0	0.0	-28.8527	-28.8527	25	1	0	1300	0	3	6

Interface residues

• A-B: ALA101B, ARG106B, ARG57A, ASN100B, ASN59A, GLN61A, GLU102B, GLU144A, GLU63A, LEU104B, PRO58A, PRO60A, SER99B, TYR40B, VAL62A
• A-D: ARG57A, ARG57D, ASN56A, ASN56D, ASP46A, ASP46D, ASP68A, ASP68D, CYS71A, CYS71D, GLN53A, GLN53D, GLY49A, GLY49D, GLY65A, GLY65D, ILE47A, ILE47D, ILE52A, ILE52D, ILE54A, ILE54D, LEU51A, LEU51D, LEU73A, MET179A, MET179D, MET48A, MET48D, MET55A, MET55D, PRO58A, PRO58D, PRO60D, PRO66A, PRO66D, SER70A, SER70D, THR69A, THR69D, TYR45D, TYR50A, TYR50D, VAL67A, VAL67D
• B-C: ARG57B, ARG57C, ASN56B, ASN56C, ASP46B, ASP46C, ASP68B, ASP68C, CYS71B, CYS71C, GLN53B, GLN53C, GLY49B, GLY49C, GLY65B, GLY65C, ILE47B, ILE47C, ILE52B, ILE52C, ILE54B, ILE54C, LEU51B, LEU51C, LEU73C, MET48B, MET48C, MET55B, MET55C, PRO58B, PRO58C, PRO60B, PRO60C, PRO66B, PRO66C, SER70B, SER70C, THR69B, THR69C, TYR45C, TYR50B, TYR50C, VAL67B, VAL67C
• C-D: ALA41C, ARG124D, ARG158D, ARG176C, ASN130D, ASN151D, ASN161D, ASP128D, GLU148D, GLY43C, GLY44C, LEU39C, LYS125D, PHE159D, PHE162D, PRO42C, SER129D, THR131D, TYR126D, TYR40C, VAL127D, VAL147D, VAL149D, VAL150D, VAL160D