2P5O

crystal structure of rb69 gp43 in complex with dna containing an abasic site analog

• Total interactions analyzed: 66
• Total true interactions: 3
• Strongest Interaction:
  • Chains: B-D
  • Int. Res.: 68
  • Norm. En. per Res.: -1.8349
• Hub Node: B(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	0.0	-2.1901	-12.9304	-15.1205	17	0	1	726	1	16	15
B-C	0.0	14.1739	-70.2862	-56.1123	57	3	0	3159	0	34	28
B-D	-7.2689	-6.2246	-111.279	-124.7724	68	6	3	6163	0	35	33

Interface residues

• A-B: ARG449A, ARG449B, ASN675A, ASN675B, ASP452A, ASP452B, ASP466A, ASP466B, GLU672A, LYS465A, LYS465B, SER451A, TYR454A, TYR454B, TYR464B, VAL453A, VAL453B
• B-C: ALA39C, ALA721B, ARG384C, ARG74C, ARG750B, ARG751B, ASN645B, ASN711B, ASP643B, ASP77C, CYS41C, GLN173B, GLN45C, GLN70C, GLN754B, GLN773B, GLU172B, GLU43C, GLU722B, GLU747B, GLU755B, GLU758B, GLU762B, GLU766B, GLU76C, GLU770B, GLY690B, GLY694B, GLY697B, GLY79C, HIS40C, ILE78C, LEU170B, LEU693B, LEU725B, LEU753B, LEU80C, LYS60C, LYS696B, LYS724B, LYS73C, LYS769B, PHE767B, PHE771B, PRO42C, PRO691B, PRO692B, PRO723B, SER44C, SER695B, THR58C, THR644B, TRP647B, TRP713B, TYR454C, TYR763B, VAL453C
• B-D: ALA655D, ALA887B, ALA895D, ARG403B, ARG403D, ARG642D, ARG656D, ARG658B, ARG658D, ASN402B, ASN606B, ASN606D, ASP634B, ASP634D, ASP649D, ASP652D, ASP890D, ASP899B, CYS609B, CYS609D, GLU607B, GLU607D, GLU612B, GLU638D, GLU657D, GLU757B, GLU757D, GLY610B, GLY610D, GLY637D, HIS646D, ILE400B, ILE632D, ILE633D, ILE698B, LEU605D, LEU651D, LEU889B, LEU889D, LEU897B, LYS405B, LYS631B, LYS631D, LYS635B, LYS635D, LYS640D, LYS653D, LYS696B, LYS696D, LYS888B, LYS888D, LYS894D, PHE616D, PHE641D, PHE650D, PHE654D, PHE898B, PHE901B, PRO401B, SER639D, SER885B, SER896B, SER896D, THR611B, TRP647D, VAL608B, VAL608D, VAL636D