2OW8
crystal structure of a 70s ribosome-trna complex reveals functional interactions and rearrangements. this file, 2ow8, contains the 30s ribosome subunit, two trna, and mrna molecules. 50s ribosome subunit is in the file 1vsa.
Total interactions analyzed 276
Total true interactions 24
Strongest Interaction Chains g-s
Int. Res. 70
Norm. En. per Res. -3.6173
Hub Node D(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
c-f 0.0 0.0 -0.0003 -0.0003 2 0 0 1 0 0 4
c-i 0.0 -36.2799 -64.3749 -100.6548 33 10 0 2906 2 16 13
d-e 0.0 9.4586 -2.4292 7.0294 7 0 0 269 0 0 9
d-f 0.0 -3.5795 -38.5651 -42.1446 29 9 0 1682 0 6 6
d-k -12.8443 5.0027 -57.5708 -65.4125 55 16 2 3475 0 17 21
d-o -27.2986 14.1281 -165.623 -178.7934 71 26 4 7795 0 13 40
e-f -19.9163 15.4371 -108.383 -112.8622 66 27 1 5441 1 17 18
e-i 0.0 0.0 -0.0004 -0.0004 2 0 0 1 0 0 0
f-i 0.0 -31.38 -125.227 -156.607 72 29 1 6854 2 49 48
g-p 0.0 0.0 -3.1252 -3.1252 7 0 0 276 0 3 2
g-s -20.5756 -65.3263 -167.311 -253.2129 70 40 5 7432 4 17 17
h-j 0.0 0.0 -32.4433 -32.4433 37 8 3 2132 0 5 7
h-l -8.7046 0.0 -55.9071 -64.6117 25 20 2 2328 0 4 7
i-m 0.0 0.0 -6.6711 -6.6711 8 0 0 346 0 0 2
i-r 0.0 15.8338 -26.3137 -10.4799 19 16 0 1826 0 1 9
j-k 0.0 0.0 -24.9188 -24.9188 15 5 0 983 0 6 10
j-n 0.0 1.2506 -2.5477 -1.2971 5 0 0 307 0 0 4
j-o 0.0 0.0 -6.3072 -6.3072 7 0 0 274 0 0 0
k-o -10.8819 -3.635 -101.595 -116.1119 48 21 3 4825 0 12 31
l-s -2.4013 -14.4256 -40.446 -57.2729 31 37 1 3635 1 14 16
m-r 0.0 0.0 -18.7778 -18.7778 21 2 1 1322 0 1 10
n-t -9.4516 -6.0107 -44.9654 -60.4277 36 25 2 3121 0 9 13
n-v 0.0 8.3384 -7.9665 0.3718 9 0 0 305 0 1 5
p-r 0.0 0.0 -1.2519 -1.2519 19 0 0 189 0 13 12