2OGR

crystal structure of yellow fluorescent protein from zoanthus sp. at 1.8 a resolution

• Total interactions analyzed: 6
• Total true interactions: 6
• Strongest Interaction:
  • Chains: B-D
  • Int. Res.: 116
  • Norm. En. per Res.: -4.1937
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	0.0	7.3083	-2.4979	4.8104	12	0	0	228	0	8	10
A-C	-64.3774	-83.5291	-286.003	-433.9095	116	12	7	11195	11	30	35
A-D	-10.2628	-4.3654	-139.212	-153.8402	102	6	4	7073	1	12	18
B-C	-10.2676	-2.2546	-133.301	-145.8232	97	4	4	7025	0	12	18
B-D	-71.7531	-125.0206	-289.693	-486.4666	116	13	8	11029	12	29	35
C-D	0.0	7.3958	-2.3366	5.0592	12	0	0	212	0	8	10

Interface residues

• A-B: ARG178A, ARG178B, ASN130A, ASN130B, ASP101A, ASP101B, GLU100A, GLU100B, GLY102A, GLY102B, PHE99A, PHE99B
• A-C: ALA147A, ALA147C, ALA223A, ALA223C, ALA225A, ALA225C, ALA229A, ALA229C, ALA231A, ALA231C, ARG176A, ARG176C, ARG178A, ARG178C, ASP164A, ASP164C, ASP173A, ASP173C, ASP182A, ASP182C, CYS149A, CYS149C, CYS179C, GLN180A, GLN180C, GLN201A, GLN201C, GLU146A, GLU146C, GLU150A, GLU150C, GLU196A, GLU196C, GLU221A, GLU221C, GLU74A, GLU74C, GLY163A, GLY163C, GLY174A, GLY174C, GLY175A, GLY175C, GLY40A, GLY40C, HIS198A, HIS198C, HIS202A, HIS202C, HIS222A, HIS222C, ILE152A, ILE152C, ILE200A, ILE200C, ILE224A, ILE224C, LEU161C, LEU170A, LEU170C, LEU204A, LEU204C, LEU205A, LEU205C, LEU230A, LEU230C, LEU98A, LEU98C, LYS151A, LYS151C, LYS157A, LYS157C, LYS162A, LYS162C, LYS203A, LYS203C, LYS39A, LYS39C, LYS41A, LYS41C, MET153A, MET153C, MET167A, MET167C, PHE181A, PHE181C, PHE199A, PHE199C, PHE226A, PHE226C, PRO154A, PRO154C, PRO156A, PRO156C, PRO227A, PRO227C, SER148A, SER148C, SER166A, SER166C, SER228A, SER228C, SER96A, THR183A, THR183C, THR73C, TRP145A, TRP145C, TRP197A, TRP197C, TYR168A, TYR168C, VAL155A, VAL155C, VAL165A, VAL165C
• A-D: ALA103A, ALA103D, ALA133A, ALA133D, ARG95A, ARG95D, ASN108A, ASN108D, ASN127A, ASN127D, ASN130A, ASN130D, ASN23A, ASN23D, ASP101A, ASP101D, ASP110A, ASP110D, ASP134A, ASP134D, ASP164A, ASP164D, ASP182A, ASP182D, CYS105A, CYS105D, CYS107A, CYS107D, CYS21A, CYS21D, GLN158A, GLN158D, GLN180A, GLN180D, GLY102A, GLY102D, GLY128A, GLY128D, GLY135A, GLY135D, GLY163A, GLY163D, GLY20A, GLY20D, GLY24A, GLY24D, GLY94A, GLY94D, HIS25A, ILE106A, ILE106D, ILE125A, ILE125D, ILE160A, ILE160D, LEU98A, LEU98D, LYS123A, LYS139A, LYS139D, LYS157A, LYS157D, LYS162A, LYS162D, LYS186A, LYS186D, LYS26A, LYS26D, MET129A, MET129D, MET138A, MET138D, PHE126A, PHE126D, PHE131A, PHE131D, PHE181A, PHE181D, PHE97A, PHE97D, PHE99A, PHE99D, PRO132A, PRO132D, PRO156D, SER96A, SER96D, THR183A, THR183D, THR92A, THR92D, TRP93A, TRP93D, VAL104A, VAL104D, VAL109D, VAL155A, VAL155D, VAL184A, VAL184D, VAL22A, VAL22D
• B-C: ALA103B, ALA103C, ALA133B, ALA133C, ARG95B, ARG95C, ASN108B, ASN108C, ASN127B, ASN127C, ASN130B, ASN130C, ASN23B, ASN23C, ASP101B, ASP101C, ASP110B, ASP110C, ASP134B, ASP134C, ASP164C, ASP182B, ASP182C, CYS105B, CYS105C, CYS107B, CYS107C, CYS21B, CYS21C, GLN158B, GLN158C, GLN180B, GLN180C, GLY102B, GLY102C, GLY128B, GLY128C, GLY135B, GLY135C, GLY163B, GLY163C, GLY20B, GLY20C, GLY24B, GLY24C, GLY94B, GLY94C, HIS25C, ILE106B, ILE106C, ILE125B, ILE125C, ILE160B, ILE160C, LEU98B, LEU98C, LYS123B, LYS157B, LYS162B, LYS162C, LYS186B, LYS186C, LYS26B, LYS26C, MET129B, MET129C, MET138C, PHE126B, PHE126C, PHE131B, PHE131C, PHE181B, PHE181C, PHE97B, PHE97C, PHE99B, PHE99C, PRO132B, PRO132C, PRO156B, SER96B, SER96C, THR183B, THR183C, THR92B, THR92C, TRP93B, TRP93C, VAL104B, VAL104C, VAL109C, VAL155B, VAL155C, VAL184B, VAL184C, VAL22B, VAL22C
• B-D: ALA147B, ALA147D, ALA223B, ALA223D, ALA225B, ALA225D, ALA229B, ALA229D, ALA231B, ALA231D, ARG176B, ARG176D, ARG178B, ARG178D, ASP164B, ASP164D, ASP173B, ASP173D, ASP182B, ASP182D, CYS149B, CYS149D, CYS179B, CYS179D, GLN180B, GLN180D, GLN201B, GLN201D, GLU146B, GLU146D, GLU150B, GLU150D, GLU196B, GLU196D, GLU221B, GLU221D, GLU74B, GLU74D, GLY163B, GLY163D, GLY174B, GLY174D, GLY175B, GLY175D, GLY40B, GLY40D, HIS198B, HIS198D, HIS202B, HIS202D, HIS222B, HIS222D, ILE152B, ILE152D, ILE200B, ILE200D, ILE224B, ILE224D, LEU169D, LEU170B, LEU170D, LEU204B, LEU204D, LEU205B, LEU230B, LEU230D, LEU98B, LEU98D, LYS151B, LYS151D, LYS157B, LYS162B, LYS162D, LYS203B, LYS203D, LYS39B, LYS39D, LYS41B, LYS41D, MET153B, MET153D, MET167B, MET167D, PHE181B, PHE181D, PHE199B, PHE199D, PHE226B, PHE226D, PRO154B, PRO154D, PRO156B, PRO156D, PRO227B, PRO227D, SER148B, SER148D, SER166B, SER166D, SER228B, SER228D, SER96B, THR183B, THR183D, THR73B, THR73D, TRP145B, TRP145D, TRP197B, TRP197D, TYR168B, TYR168D, VAL155B, VAL155D, VAL165B, VAL165D
• C-D: ARG178C, ARG178D, ASN130C, ASN130D, ASP101C, ASP101D, GLU100C, GLU100D, GLY102C, GLY102D, PHE99C, PHE99D