2NYG

crystal structure of yokd protein from bacillus subtilis

• Total interactions analyzed: 15
• Total true interactions: 7
• Strongest Interaction:
  • Chains: C-D
  • Int. Res.: 146
  • Norm. En. per Res.: -2.4873
• Hub Node: B(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-2.7136	4.7418	-310.471	-308.4428	133	20	7	13605	0	14	10
A-F	0.0	0.0	-26.7115	-26.7115	42	2	0	1463	0	16	11
B-C	0.0	-4.1081	-11.2718	-15.3799	28	1	0	447	0	19	19
B-D	0.0	0.0	-0.0021	-0.0021	2	0	0	1	0	3	3
B-F	0.0	5.9387	-0.5155	5.4233	10	0	0	91	0	7	7
C-D	-9.6595	5.0161	-358.509	-363.1523	146	20	8	15402	0	16	13
E-F	-10.9232	5.5922	-203.034	-208.3649	116	10	6	9794	0	16	7

Interface residues

• A-B: ALA100A, ALA100B, ALA49A, ALA49B, ALA51A, ALA51B, ARG110A, ARG110B, ARG120A, ARG120B, ARG127A, ARG127B, ARG13A, ARG13B, ARG209A, ARG209B, ARG95A, ARG95B, ASN102A, ASN102B, ASN104A, ASN104B, ASN46A, ASN46B, ASN83B, ASP92A, ASP92B, GLN114A, GLN114B, GLN16A, GLN16B, GLN54A, GLN54B, GLU117A, GLU117B, GLU124A, GLU124B, GLU74A, GLU74B, GLU7A, GLU89A, GLU89B, GLU96A, GLU96B, GLY43A, GLY47A, GLY47B, GLY48A, GLY48B, ILE204A, ILE204B, ILE53A, ILE53B, ILE5A, ILE93A, ILE93B, ILE94A, ILE94B, LEU118A, LEU118B, LEU2A, LEU39A, LEU39B, LEU75A, LEU75B, LYS15A, LYS15B, LYS3A, LYS4A, MET98A, MET98B, PHE119A, PHE119B, PHE11A, PRO107A, PRO107B, PRO123A, PRO123B, PRO12A, PRO12B, PRO202A, PRO202B, PRO78A, PRO78B, PRO84A, PRO84B, PRO85B, PRO87A, PRO87B, PRO99A, PRO99B, SER103A, SER103B, SER121A, SER121B, SER17A, SER17B, SER8A, SER97A, SER97B, THR106A, THR106B, THR108A, THR108B, THR10A, THR14A, THR14B, THR9A, TRP211A, TRP211B, TRP44A, TRP44B, TRP81A, TRP81B, TRP90A, TRP90B, TRP91A, TRP91B, TYR101A, TYR101B, TYR105A, TYR105B, TYR122A, TYR122B, VAL45A, VAL45B, VAL50A, VAL50B, VAL52A, VAL52B, VAL6A, VAL86A, VAL86B
• A-F: ALA100A, ARG127F, ARG209A, ASN102A, ASN102F, ASN104F, ASN129A, ASN129F, ASN143F, ASN147A, ASN147F, GLN148A, GLN148F, GLN158A, GLN158F, GLU157F, GLU206A, GLU206F, GLY207A, GLY207F, HIS130F, HIS149A, HIS149F, ILE166F, ILE203A, ILE203F, ILE204A, ILE204F, LEU146F, LEU151A, LYS144F, LYS163F, LYS208A, LYS208F, LYS212A, PRO150A, SER103F, SER128F, TYR101F, TYR105A, VAL205A, VAL205F
• B-C: ALA230B, ALA233B, ASN143C, ASN147C, ASN265B, GLU124C, GLU168B, GLU206C, GLU254B, GLU62C, GLU63B, GLY207C, GLY26B, HIS141C, ILE145C, ILE204C, LYS140C, LYS142C, LYS144C, LYS208C, LYS261B, LYS28B, LYS29B, MET31B, PHE258B, SER251B, THR253B, TYR170B
• B-D: GLU124D, VAL239B
• B-F: ASP58B, GLN54B, GLU124B, GLU206F, GLU62B, ILE57B, LYS15B, LYS212F, TYR122B, VAL210F
• C-D: ALA100C, ALA100D, ALA49C, ALA49D, ALA51C, ALA51D, ALA55D, ARG110C, ARG110D, ARG120C, ARG120D, ARG127C, ARG127D, ARG13C, ARG13D, ARG209C, ARG209D, ARG95C, ARG95D, ASN102C, ASN102D, ASN104C, ASN104D, ASN46C, ASN46D, ASN83C, ASN83D, ASP92C, ASP92D, GLN114C, GLN114D, GLN16C, GLN16D, GLN54C, GLN54D, GLU117C, GLU117D, GLU124C, GLU124D, GLU74C, GLU74D, GLU7C, GLU7D, GLU89C, GLU89D, GLU96C, GLU96D, GLY47C, GLY47D, GLY48C, GLY48D, GLY82C, ILE204C, ILE204D, ILE53C, ILE53D, ILE5C, ILE5D, ILE93C, ILE93D, ILE94C, ILE94D, LEU118C, LEU118D, LEU2C, LEU2D, LEU39C, LEU39D, LEU75C, LEU75D, LYS15C, LYS15D, LYS3C, LYS3D, LYS4C, LYS4D, MET98C, MET98D, PHE119C, PHE119D, PHE11C, PHE11D, PRO107C, PRO107D, PRO123C, PRO123D, PRO12C, PRO12D, PRO202C, PRO202D, PRO78C, PRO78D, PRO84C, PRO84D, PRO85C, PRO85D, PRO87C, PRO87D, PRO99C, PRO99D, SER103C, SER103D, SER121C, SER121D, SER17C, SER17D, SER8C, SER8D, SER97C, SER97D, THR106C, THR106D, THR108C, THR108D, THR10C, THR10D, THR14C, THR14D, THR9C, THR9D, TRP211C, TRP211D, TRP44C, TRP44D, TRP81C, TRP81D, TRP90C, TRP90D, TRP91C, TRP91D, TYR101C, TYR101D, TYR105C, TYR105D, TYR122C, TYR122D, VAL45C, VAL45D, VAL50C, VAL50D, VAL52C, VAL52D, VAL6C, VAL6D, VAL86C, VAL86D
• E-F: ALA100E, ALA100F, ALA49E, ALA49F, ALA51E, ALA51F, ARG110E, ARG110F, ARG120E, ARG120F, ARG127E, ARG127F, ARG13E, ARG13F, ARG209E, ARG209F, ARG95E, ARG95F, ASN102E, ASN102F, ASN104E, ASN104F, ASN46E, ASN46F, ASP92E, GLN114E, GLN114F, GLN16E, GLN16F, GLN54E, GLN54F, GLU117E, GLU117F, GLU124F, GLU74E, GLU74F, GLU89F, GLU96E, GLU96F, GLY47E, GLY47F, GLY48E, GLY48F, ILE18F, ILE204E, ILE204F, ILE53E, ILE53F, ILE93E, ILE93F, ILE94E, ILE94F, LEU118E, LEU118F, LEU39E, LEU39F, LEU75E, LEU75F, LYS15E, LYS15F, MET98E, MET98F, PHE119E, PHE119F, PRO107E, PRO107F, PRO123E, PRO123F, PRO12E, PRO202E, PRO202F, PRO78E, PRO78F, PRO84E, PRO87E, PRO87F, PRO99E, PRO99F, SER103E, SER121E, SER121F, SER17E, SER17F, SER76F, SER97E, SER97F, THR106E, THR106F, THR108E, THR108F, THR14E, THR14F, TRP211E, TRP211F, TRP44E, TRP44F, TRP81E, TRP81F, TRP90E, TRP90F, TRP91E, TRP91F, TYR101E, TYR101F, TYR105E, TYR105F, TYR122E, TYR122F, VAL45E, VAL45F, VAL50E, VAL50F, VAL52E, VAL52F, VAL86E, VAL86F