2NXM

structure of hiv-1 protease d25n complexed with the rt-rh analogue peptide gly-ala-gln-thr-phe*tyr-val-asp-gly-ala

• Total interactions analyzed: 3
• Total true interactions: 3
• Strongest Interaction:
  • Chains: A-B
  • Int. Res.: 112
  • Norm. En. per Res.: -7.0735
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-174.3339	-47.6607	-570.237	-792.2316	112	39	15	20194	4	8	4
A-P	-41.1938	-18.8356	-118.004	-178.0334	41	10	7	4512	1	2	2
B-P	-66.8923	17.7818	-119.768	-168.8785	39	14	10	4784	0	3	2

Interface residues

• A-B: ALA28A, ALA28B, ARG87A, ARG87B, ARG8A, ARG8B, ASN25A, ASN25B, ASN83A, ASN88A, ASN88B, ASN98A, ASN98B, ASP29A, ASP29B, ASP30A, ASP30B, CYS67A, CYS67B, CYS95A, CYS95B, GLN2A, GLN2B, GLN92A, GLN92B, GLY27A, GLY27B, GLY48A, GLY48B, GLY49A, GLY49B, GLY51A, GLY51B, GLY52A, GLY52B, GLY68A, GLY68B, GLY78A, GLY86A, GLY86B, GLY94A, GLY94B, HIS69A, HIS69B, ILE3A, ILE3B, ILE47A, ILE47B, ILE50A, ILE50B, ILE54A, ILE54B, ILE66A, ILE66B, ILE84A, ILE84B, ILE85A, ILE85B, ILE93A, ILE93B, LEU10A, LEU10B, LEU23A, LEU23B, LEU24A, LEU24B, LEU5A, LEU5B, LEU76A, LEU89A, LEU89B, LEU90A, LEU90B, LEU97A, LEU97B, LYS55A, LYS55B, LYS7A, LYS7B, PHE53A, PHE53B, PHE99A, PHE99B, PRO1A, PRO1B, PRO79A, PRO79B, PRO81A, PRO81B, PRO9A, PRO9B, THR12B, THR26A, THR26B, THR4A, THR4B, THR80A, THR80B, THR91A, THR91B, THR96A, THR96B, TRP6A, TRP6B, VAL11A, VAL11B, VAL32A, VAL32B, VAL56A, VAL56B, VAL82A, VAL82B
• A-P: ALA28A, ALA2P, ARG87A, ARG8A, ASN25A, ASN83A, ASP29A, ASP30A, ASP8P, GLN3P, GLN58A, GLY27A, GLY48A, GLY49A, GLY51A, GLY52A, GLY86A, GLY9P, ILE47A, ILE50A, ILE54A, ILE84A, ILE85A, LEU10A, LEU23A, LEU76A, LYS45A, MET46A, PHE53A, PHE5P, PRO81A, PRO9A, THR26A, THR31A, THR4P, THR80A, TYR6P, VAL32A, VAL56A, VAL7P, VAL82A
• B-P: ALA28B, ALA2P, ARG87B, ARG8B, ASN25B, ASN83B, ASP29B, ASP30B, ASP8P, GLN3P, GLY27B, GLY48B, GLY49B, GLY51B, GLY52B, GLY86B, GLY9P, ILE47B, ILE50B, ILE54B, ILE84B, LEU10B, LEU23B, LEU76B, LYS45B, MET46B, PHE53B, PHE5P, PRO81B, PRO9B, THR26B, THR31B, THR4P, THR80B, TYR6P, VAL32B, VAL56B, VAL7P, VAL82B