2NVQ
rna polymerase ii elongation complex in 150 mm mg+2 with 2'dutp
Total interactions analyzed 78
Total true interactions 22
Strongest Interaction Chains C-L
Int. Res. 58
Norm. En. per Res. -4.3352
Hub Node A(7)
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Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -394.8048 -225.4165 -2597.3 -3217.5212 757 158 57 106354 21 264 235
A-C -12.2294 5.1091 -75.9226 -83.0428 54 1 0 3083 0 16 16
A-E -77.8227 -77.3632 -546.765 -701.9508 196 25 15 23196 8 79 62
A-F -40.271 -53.3369 -444.958 -538.5659 160 22 15 18789 1 46 42
A-H -64.0737 -13.8503 -387.441 -465.365 138 33 12 17503 3 36 34
A-I -128.4821 -46.6568 -419.599 -594.7378 141 27 9 17005 5 58 53
A-K -32.1647 -32.4223 -255.939 -320.526 89 11 7 9937 3 22 20
B-C -85.3282 -92.5377 -476.321 -654.187 160 40 6 17839 4 54 60
B-F 0.0 0.0 -6.4188 -6.4188 13 0 0 336 0 5 7
B-H 0.0 0.0 -0.1262 -0.1262 2 0 0 31 0 0 0
B-I -26.9374 -59.5112 -323.646 -410.0946 138 17 2 13877 4 49 51
B-J -27.0472 -29.0657 -413.004 -469.1168 138 35 7 18751 3 37 37
B-K -2.1508 -15.5046 -85.6822 -103.3377 56 5 0 3280 2 16 19
B-L -59.6602 -60.2568 -217.131 -337.048 111 11 8 10346 6 42 43
C-H 0.0 -3.7612 -24.8007 -28.5619 21 0 1 1144 0 8 6
C-J -40.1145 -54.3545 -221.526 -315.995 111 21 9 11513 4 39 27
C-K -24.9365 -38.798 -479.709 -543.4435 151 35 17 22247 5 43 46
C-L -60.1069 -41.4288 -149.906 -251.4417 58 9 8 5694 6 25 15
E-F -7.0841 -15.5333 -19.8036 -42.4209 21 1 0 1068 0 5 4
H-K -9.2016 0.0 -26.3013 -35.5029 24 2 0 1470 1 5 5
J-L 0.0 0.0 -2.4897 -2.4897 9 0 0 243 0 0 1
K-L 0.0 5.6167 -0.5021 5.1145 6 0 0 125 0 2 2