2LMQ
structural model for a 40-residue beta-amyloid fibril with three-fold symmetry, negative stagger
Total interactions analyzed 153
Total true interactions 111
Strongest Interaction Chains B-C
Int. Res. 64
Norm. En. per Res. -8.7814
Hub Node B(13)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -160.1717 70.8178 -284.364 -373.718 64 29 18 11429 0 7 15
A-C 0.0 -0.9783 -35.2485 -36.2268 45 0 3 1469 0 5 14
A-D 0.0 0.0 -10.6234 -10.6234 18 0 0 515 0 2 5
A-E 0.0 0.0 -0.0034 -0.0034 2 0 0 4 0 0 0
A-G 0.0 0.0 -10.6765 -10.6765 12 1 1 378 0 0 0
A-H 0.0 0.0 -2.1218 -2.1218 9 0 0 307 0 0 0
A-I 0.0 0.0 -5.1206 -5.1206 3 0 0 203 0 0 0
A-M 0.0 0.0 -7.5246 -7.5246 10 2 1 417 0 0 0
A-N 0.0 0.0 -7.1146 -7.1146 13 1 1 383 0 0 0
A-O 0.0 0.0 -0.0353 -0.0353 4 0 0 14 0 0 0
A-P 0.0 0.0 -0.0004 -0.0004 2 0 0 1 0 0 0
B-C -188.4664 63.7831 -437.329 -562.0123 64 36 21 13885 0 7 15
B-D 0.0 7.3204 -31.3387 -24.0183 51 7 3 1789 0 5 15
B-E 0.0 0.0 -2.5629 -2.5629 15 0 0 350 0 1 8
B-F 0.0 0.0 -0.0011 -0.0011 2 0 0 3 0 0 0
B-G 0.0 0.0 -2.4464 -2.4464 8 0 1 190 0 0 1
B-H 0.0 0.0 -16.9834 -16.9834 11 1 1 613 0 1 1
B-I -4.1271 0.0 -14.1893 -18.3164 9 0 1 612 0 1 1
B-J 0.0 0.0 -0.1876 -0.1876 3 0 0 16 0 0 0
B-M 0.0 0.0 -8.6647 -8.6647 7 0 0 472 0 0 0
B-N 0.0 0.0 -15.0184 -15.0184 12 3 1 690 0 0 1
B-O 0.0 1.8477 -4.0458 -2.1981 10 3 1 266 0 1 2
B-P 0.0 1.1037 -0.1011 1.0025 2 0 0 22 0 1 2
B-Q 0.0 0.0 -0.0019 -0.0019 2 0 0 1 0 0 1
C-D -149.0949 73.2812 -381.154 -456.9677 64 43 19 13453 0 7 15
C-E 0.0 8.6624 -41.2701 -32.6077 55 3 3 1921 0 4 14
C-F 0.0 0.0 -4.0838 -4.0838 17 1 0 478 0 0 6
C-H 0.0 0.0 -1.1886 -1.1886 12 0 0 176 0 1 1
C-I 0.0 0.0 -21.5493 -21.5493 13 1 1 691 0 1 2
C-J 0.0 0.0 -4.6284 -4.6284 8 0 1 313 0 0 0
C-K 0.0 0.0 -0.0092 -0.0092 2 0 0 8 0 0 0
C-M 0.0 0.0 -0.2552 -0.2552 3 0 0 67 0 0 0
C-N 0.0 0.0 -2.9676 -2.9676 8 0 0 336 0 0 0
C-O 0.0 0.0 -10.0724 -10.0724 13 2 1 534 0 1 2
C-P 0.0 -3.3552 -3.8097 -7.1649 8 0 1 299 0 1 2
C-Q 0.0 1.3712 -0.7108 0.6604 3 0 0 73 0 0 2
D-E -181.5837 18.8388 -373.339 -536.0839 62 35 18 12987 1 6 15
D-F 0.0 10.5991 -37.7286 -27.1295 52 9 2 1900 0 4 13
D-H 0.0 0.0 -0.8757 -0.8757 7 0 0 80 0 1 1
D-I 0.0 -6.9243 -6.1517 -13.076 10 0 0 269 1 1 3
D-J 0.0 -9.8907 -12.991 -22.8817 11 0 1 610 1 1 1
D-K 0.0 0.0 -3.8829 -3.8829 6 0 1 190 0 0 0
D-N 0.0 0.0 -0.4313 -0.4313 2 0 0 68 0 0 0
D-O 0.0 0.0 -6.9699 -6.9699 8 0 0 386 0 1 1
D-P 0.0 0.0 -14.042 -14.042 15 0 1 602 0 1 2
D-Q 0.0 11.4191 -4.9086 6.5105 10 1 0 353 0 1 2
D-R 0.0 5.2285 -6.9555 -1.7269 4 0 0 182 0 1 2
E-F -148.7438 79.8618 -319.916 -388.798 64 40 19 12572 0 6 15
E-I 0.0 0.4198 -0.0233 0.3964 5 0 0 9 0 0 2
E-J 0.0 0.0 -4.072 -4.072 10 0 0 206 0 0 2
E-K 0.0 0.0 -9.8769 -9.8769 11 0 1 375 0 0 0
E-L 0.0 0.0 -2.1564 -2.1564 5 0 1 171 0 0 0
E-P 0.0 0.0 -2.5096 -2.5096 6 0 0 192 0 0 0
E-Q 0.0 0.0 -9.6766 -9.6766 10 1 1 350 0 0 0
E-R 0.0 0.0 -0.1855 -0.1855 4 0 0 56 0 0 0
F-J 0.0 1.3717 -0.0286 1.3431 3 0 0 15 0 1 2
F-K 0.0 0.0 -0.4997 -0.4997 5 0 0 121 0 0 0
F-L 0.0 0.0 -8.3948 -8.3948 8 1 1 358 0 0 0
F-P 0.0 0.0 -0.0194 -0.0194 3 0 0 8 0 0 0
F-Q 0.0 0.0 -5.969 -5.969 6 0 1 262 0 0 0
F-R 0.0 0.0 -9.4626 -9.4626 10 1 1 364 0 0 0
G-H -156.7816 53.7668 -344.234 -447.2488 63 25 21 11615 0 7 15
G-I 0.0 8.3418 -40.6934 -32.3516 47 6 3 1795 0 5 13
G-J 0.0 0.0 -4.9734 -4.9734 21 0 1 422 0 2 5
G-K 0.0 0.0 -0.0035 -0.0035 2 0 0 5 0 0 0
G-M 0.0 0.0 -6.9217 -6.9217 9 1 1 298 0 0 0
G-N 0.0 0.0 -1.3346 -1.3346 6 0 0 191 0 0 0
G-O 0.0 0.0 -0.008 -0.008 2 0 0 6 0 0 0
H-I -164.144 70.2083 -390.185 -484.1207 64 34 21 12954 0 7 15
H-J 0.0 7.3961 -50.5914 -43.1953 55 3 3 2068 0 6 14
H-K 0.0 0.0 -9.114 -9.114 17 0 1 574 0 0 5
H-M 0.0 0.0 -1.6377 -1.6377 11 0 1 174 0 0 0
H-N 0.0 0.0 -10.5849 -10.5849 13 0 1 509 0 1 1
H-O 0.0 0.0 -0.7555 -0.7555 6 0 0 181 0 1 0
H-P 0.0 0.0 -0.073 -0.073 2 0 0 19 0 0 0
I-J -166.4534 80.2088 -432.942 -519.1866 64 32 21 14075 0 7 15
I-K 0.0 5.1591 -44.9127 -39.7536 52 4 3 1965 0 5 13
I-L 0.0 0.0 -4.9669 -4.9669 18 0 0 546 0 0 4
I-M 0.0 0.0 -0.0251 -0.0251 5 0 0 13 0 1 1
I-N 0.0 -4.6641 -7.3115 -11.9756 12 1 1 361 0 1 1
I-O 0.0 0.0 -8.9 -8.9 16 2 1 478 0 1 1
I-P 0.0 0.0 -1.3697 -1.3697 8 0 0 170 0 0 0
J-K -162.9741 53.2048 -394.094 -503.8633 64 26 18 13075 0 6 15
J-L 0.0 1.4362 -35.9111 -34.4749 49 2 3 1872 0 5 13
J-N 0.0 0.0 -0.0203 -0.0203 5 0 0 20 0 1 1
J-O 0.0 -5.1801 -4.6087 -9.7888 15 2 1 340 0 1 2
J-P 0.0 0.0 -18.3462 -18.3462 15 3 1 814 0 1 1
J-Q 0.0 0.0 -1.6194 -1.6194 9 0 0 232 0 0 0
K-L -170.4476 80.7306 -388.488 -478.2049 64 33 23 13104 0 6 15
K-O 0.0 -2.0728 -1.0914 -3.1642 6 0 0 94 0 1 2
K-P 0.0 5.2706 -9.9352 -4.6646 13 0 0 404 0 1 2
K-Q 0.0 0.0 -7.8795 -7.8795 12 0 1 376 0 1 1
K-R 0.0 0.0 -1.7757 -1.7757 6 0 1 157 0 0 0
L-O 0.0 0.0 -0.0014 -0.0014 2 0 0 1 0 1 1
L-P 0.0 -1.1198 -2.3412 -3.4609 4 0 0 150 0 1 2
L-Q 0.0 0.0 -0.3142 -0.3142 10 0 0 89 0 1 2
L-R 0.0 0.0 -7.3275 -7.3275 11 0 1 324 0 0 0
M-N -163.7105 101.936 -354.656 -416.4305 64 30 21 12512 0 8 15
M-O 0.0 12.5828 -34.3246 -21.7418 49 2 3 1624 0 5 14
M-P 0.0 0.0 -9.5373 -9.5373 16 0 0 444 0 0 4
M-Q 0.0 0.0 -0.0341 -0.0341 4 0 0 12 0 0 0
N-O -155.1325 37.8672 -368.399 -485.6643 63 31 18 12183 0 8 15
N-P 0.0 9.7191 -33.1474 -23.4283 49 6 4 1746 0 4 13
N-Q 0.0 0.0 -6.8282 -6.8282 12 1 0 376 0 1 6
N-R 0.0 0.0 -0.0031 -0.0031 2 0 0 3 0 0 0
O-P -147.5287 70.8687 -393.329 -469.989 64 35 21 13510 0 7 15
O-Q 0.0 5.7056 -38.3475 -32.6419 47 4 3 1686 0 5 14
O-R 0.0 0.0 -5.0412 -5.0412 16 0 0 439 0 1 6
P-Q -144.4669 47.8643 -349.594 -446.1966 64 29 20 12470 0 6 15
P-R -9.2408 9.1115 -46.5697 -46.6991 48 6 2 1938 0 3 14
Q-R -147.2988 95.3249 -388.605 -440.5789 63 23 20 12647 0 7 15