2LMO
structural model for a 40-residue beta-amyloid fibril with two-fold symmetry, negative stagger
Total interactions analyzed 66
Total true interactions 46
Strongest Interaction Chains C-D
Int. Res. 62
Norm. En. per Res. -7.3346
Hub Node C(8)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -119.3251 34.0762 -285.476 -370.725 63 21 18 10626 0 7 15
A-C 0.0 -0.3327 -18.5032 -18.8359 39 0 4 972 0 3 14
A-D 0.0 0.0 -0.1416 -0.1416 5 0 0 61 0 4 4
A-G 0.0 0.0 -28.1371 -28.1371 25 10 0 1844 0 0 0
A-H 0.0 0.0 -28.1312 -28.1312 24 6 0 1185 0 0 0
A-I 0.0 0.0 -0.1897 -0.1897 10 0 0 62 0 0 0
B-C -130.1427 46.2381 -318.333 -402.2376 64 19 21 12145 0 6 15
B-D 0.0 4.0706 -22.2786 -18.208 49 1 1 1177 1 6 14
B-E 0.0 0.0 -0.2332 -0.2332 7 0 0 95 0 2 5
B-G 0.0 0.0 -2.004 -2.004 18 0 0 310 0 0 0
B-H 0.0 0.0 -31.743 -31.743 24 8 0 1717 0 0 0
B-I 0.0 0.0 -30.1288 -30.1288 22 3 0 1101 0 0 0
B-J 0.0 0.0 -0.1955 -0.1955 9 0 0 70 0 0 0
C-D -160.2529 50.8034 -345.296 -454.7454 62 22 19 12079 0 8 15
C-E 0.0 17.0079 -21.5749 -4.567 48 0 2 1273 0 6 14
C-F 0.0 0.0 -0.5591 -0.5591 13 0 0 141 0 3 6
C-H 0.0 0.0 -1.9685 -1.9685 17 0 0 291 0 0 0
C-I 0.0 0.0 -45.1466 -45.1466 22 5 0 1546 0 0 0
C-J 0.0 0.0 -23.9506 -23.9506 24 8 0 1160 0 0 0
C-K 0.0 0.0 -0.1655 -0.1655 11 0 0 65 0 0 0
C-L 0.0 0.0 -0.0101 -0.0101 2 0 0 5 0 0 0
D-E -163.7321 33.2104 -322.882 -453.4037 62 22 16 11395 0 7 15
D-F 0.0 -3.9158 -32.3379 -36.2537 51 1 2 1452 0 4 13
D-I 0.0 0.0 -1.9187 -1.9187 17 0 0 286 0 0 0
D-J 0.0 0.0 -13.3349 -13.3349 24 10 0 1630 0 0 0
D-K 0.0 0.0 -28.6195 -28.6195 21 0 0 1008 0 0 0
D-L 0.0 0.0 -0.2219 -0.2219 10 0 0 60 0 0 0
E-F -153.3326 48.3232 -344.349 -449.3585 64 33 18 12792 0 4 15
E-J 0.0 0.0 -2.1974 -2.1974 20 0 0 306 0 0 0
E-K 0.0 0.0 -37.519 -37.519 24 9 0 1634 0 0 0
E-L 0.0 0.0 -25.8905 -25.8905 25 3 0 1206 0 0 0
F-K 0.0 0.0 -0.6206 -0.6206 14 0 0 171 0 0 0
F-L 0.0 0.0 -34.6155 -34.6155 23 7 0 1533 0 0 0
G-H -131.3951 58.3742 -286.394 -359.4149 62 25 18 10434 0 6 15
G-I 0.0 -4.0576 -25.3721 -29.4297 46 3 2 1406 2 5 13
G-J 0.0 0.0 -0.7576 -0.7576 12 0 0 140 0 3 5
H-I -133.4724 52.4752 -354.128 -435.1252 64 19 23 12217 0 6 15
H-J 0.0 -0.917 -30.4795 -31.3965 50 0 1 1490 1 6 13
H-K 0.0 0.0 -0.4549 -0.4549 10 0 0 126 0 2 4
H-L 0.0 0.0 -0.0422 -0.0422 4 0 0 17 0 2 0
I-J -139.0128 52.2553 -348.399 -435.1565 64 35 12 12483 0 7 15
I-K -12.5466 -3.5301 -43.4018 -59.4785 54 6 1 1867 2 5 14
I-L 0.0 -10.1749 -21.7919 -31.9668 21 0 0 1010 1 2 3
J-K -154.1957 41.7825 -318.227 -430.6402 63 27 14 10911 0 6 15
J-L 0.0 -11.7411 -35.2031 -46.9442 46 6 5 1823 1 6 13
K-L -112.0907 43.7507 -272.65 -340.99 64 37 20 11303 0 6 15