2JA7
cpd lesion containing rna polymerase ii elongation complex c
Total interactions analyzed 435
Total true interactions 61
Strongest Interaction Chains A-B
Int. Res. 769
Norm. En. per Res. -4.1559
Hub Node B(11)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -392.5761 -304.6976 -2498.64 -3195.9138 769 233 62 109645 24 261 237
A-C -12.742 10.4473 -63.0522 -65.3469 49 7 0 3011 0 17 19
A-D 0.0 -10.785 -21.6773 -32.4623 31 2 1 1422 0 11 4
A-E -85.4162 -86.0536 -542.663 -714.1329 207 44 14 23599 7 79 62
A-F -95.8745 -52.1195 -488.891 -636.885 175 45 15 21405 2 65 55
A-G -11.4783 -66.9743 -116.72 -195.1726 67 10 4 5593 3 22 15
A-H -69.7049 -26.5126 -361.747 -457.9645 138 57 13 17208 4 35 35
A-I -93.4102 -35.9209 -422.378 -551.7091 138 44 11 17241 4 54 49
A-K -20.1448 -25.5977 -239.257 -284.9995 92 24 8 9968 3 23 20
A-P 0.0 -15.7865 13 ARG209P, ARG28A, ARG36A, ASP189P, ASP204P, ASP205P, ASP85A, GLU206P, GLU208P, GLU277A, HIS281A, HIS83A, LYS34A
B-C -86.9731 -109.3548 -410.374 -606.7019 167 46 4 17882 10 58 60
B-D -7.7744 -17.4572 -43.2635 -68.4951 34 2 1 2455 2 16 19
B-E 0.0 0.0 -2.0513 -2.0513 9 3 0 366 0 2 1
B-F -12.3458 -14.4058 -17.0015 -43.7532 27 2 0 684 1 7 8
B-G -8.4828 -3.2083 -9.264 -20.9552 27 1 0 862 0 6 4
B-H 0.0 0.0 -0.6048 -0.6048 2 0 0 49 0 0 0
B-I -3.8497 -61.3182 -261.698 -326.8659 131 23 2 13240 3 51 50
B-J -28.8912 -28.8238 -366.407 -424.1219 140 38 6 18148 3 35 37
B-K -11.1374 -11.6722 -76.6809 -99.4905 57 13 0 3406 2 16 18
B-L -40.1589 -60.0705 -201.862 -302.0914 108 14 8 10527 8 44 43
B-S 0.0 -3.42 2 ASP118S, HIS1177B
C-H 0.0 -2.8487 -28.699 -31.5477 24 0 1 1424 0 8 7
C-J -59.9915 -12.6944 -217.497 -290.1828 105 42 11 12476 6 38 26
C-K -21.8105 -25.6252 -409.308 -456.7437 155 40 16 21685 6 46 45
C-L -34.3989 -73.4671 -136.536 -244.402 61 9 9 5850 7 23 16
D-F 0.0 0.0 -0.7682 -0.7682 6 0 0 135 0 1 2
D-G -40.5761 5.3582 -498.283 -533.5008 194 47 21 24124 7 59 52
D-M -7.2753 -22.3075 -57.7829 -87.3657 45 8 0 2532 4 44 23
E-F -11.0936 -24.5453 -25.1377 -60.7766 23 6 0 1286 1 7 4
F-G -5.1937 -12.4063 -104.302 -121.902 56 6 1 4865 1 11 12
G-M 0.0 0.0 -1.186 -1.186 6 0 0 101 0 4 0
G-N 0.0 -5.0043 0.0 -5.0043 4 0 0 0 0 0 0
G-S 0.0 7.2783 12 GLU100G, GLU100S, HIS113G, HIS113S, HIS158G, HIS158S, HIS97G, HIS97S, LYS107G, LYS107S, LYS112G, LYS112S
H-K 0.0 0.0 -21.1613 -21.1613 24 1 0 1493 0 4 5
J-L 0.0 0.0 -10.3504 -10.3504 9 0 0 516 0 1 1
K-L 0.0 8.4374 -1.5428 6.8945 5 0 0 212 0 3 2
M-N -413.4509 -300.5039 -939.497 -1653.4519 447 77 12 40553 4 104 98
M-O -11.3082 10.2218 5 ASP190O, ASP538M, ASP672M, GLU194O, LYS738M
M-P 0.0 -10.4931 2 ARG14P, GLU226M
M-Q -88.9918 -85.2268 35 ARG1012M, ARG1326M, ARG1345M, ARG14Q, ARG169Q, ARG200Q, ARG207Q, ARG212Q, ARG857M, ASP1013M, ASP1323M, ASP182Q, ASP853M, ASP871M, GLN174Q, GLU1005M, GLU1342M, GLU148Q, GLU163Q, GLU203Q, GLU870M, GLU945M, HIS146Q, HIS147Q, HIS153Q, ILE1327M, LYS201Q, PHE866M, SER205Q, THR1318M, THR1325M, THR204Q, TYR168Q, TYR208Q, VAL863M
M-R -82.745 -51.7479 27 ARG1055M, ARG135R, ARG92R, ASP116R, ASP140R, ASP1442M, ASP1446M, ASP145R, ASP154R, ASP77R, ASP853M, ASP874M, GLU1062M, GLU149R, GLU495M, GLU496M, GLU500M, GLU89R, HIS1059M, LYS1003M, LYS1452M, LYS87R, MET1444M, PHE1441M, PRO131R, TYR852M, VAL133R
M-S -10.7166 -67.3289 12 ARG21S, ARG58S, ARG60S, ASP1442M, ASP1446M, ASP65S, GLU1447M, GLU1448M, GLU496M, ILE61S, LYS23S, VAL1443M
M-T -71.1018 -18.2508 30 ALA564M, ARG19T, ARG25T, ARG537M, ASP41T, ASP538M, ASP602M, ASP609M, ASP739M, ASP94T, ASP974M, GLU106T, GLU138T, GLU45T, GLY119T, GLY120T, HIS975M, ILE560M, ILE566M, LEU598M, LYS103T, LYS136T, LYS22T, LYS567M, LYS569M, LYS601M, SER573M, TRP79T, TYR98T, VAL96T
M-U -78.43 -33.029 34 ARG1194M, ARG17U, ARG45U, ARG711M, ARG91U, ASN700M, ASP1257M, ASP65U, ASP781M, ASP94U, GLN87U, GLU1151M, GLU1196M, GLU1255M, GLU1256M, GLU1264M, GLU18U, GLU47U, GLU712M, HIS46U, ILE1148M, ILE1152M, ILE49U, LEU48U, LYS115U, LYS1261M, LYS789M, LYS93U, PRO41U, SER1150M, THR67U, TYR1154M, TYR44U, VAL43U
M-W -20.0895 -28.2748 14 ARG469M, ARG47W, ASN2W, ASN548M, ASP356M, ASP544M, ASP555M, ASP557M, HIS65W, LYS26W, LYS62W, LYS651M, SER369M, TYR61W
N-O -74.149 -112.9292 32 ARG1060N, ARG1067N, ARG34O, ARG35O, ARG848N, ARG852N, ARG969N, ARG995N, ARG996N, ASP181O, ASP190O, ASP60O, ASP847N, ASP950N, ASP998N, GLU1004N, GLU177O, GLU179O, GLU194O, GLU200O, GLU40O, GLU61O, GLU997N, HIS1076N, HIS167O, HIS188O, HIS65O, LYS1079N, LYS1080N, LYS165O, MET1082N, TYR180O
N-P -8.5739 -16.9081 6 ARG12P, ARG13P, ASP1190N, ASP1219N, GLY1164N, LYS17P
N-R -10.9553 -13.952 3 ASP1223N, ASP140R, LYS72R
N-S -8.2179 -3.2541 4 ASP1190N, LYS1148N, LYS41S, THR64S
N-U -6.3797 -60.0634 15 ARG617N, ARG620N, ARG91U, ARG92U, ASP391N, ASP394N, ASP576N, ASP618N, ASP61U, ASP65U, GLU312N, HIS46U, LYS393N, LYS622N, LYS93U
N-V -32.1799 -26.9474 15 ARG43V, ARG48V, ARG62V, ARG6V, ARG848N, ASN822N, GLU1004N, GLU1041N, GLU186N, GLU32V, GLU816N, LYS191N, LYS42V, LYS59V, PHE8V
N-W -5.6972 -13.3761 7 ARG6W, ASP39W, ASP847N, ASP998N, GLU997N, HIS1076N, HIS40W
N-X -53.7687 -62.5975 25 ALA32X, ARG120N, ARG42X, ARG54X, ARG70X, ARG852N, ARG904N, ASP847N, ASP894N, ASP896N, GLN66X, GLU104N, GLU116N, GLU33X, GLU68X, GLU875N, HIS110N, HIS53X, LEU56X, LEU898N, LYS193N, LYS28X, LYS58X, LYS962N, VAL954N
O-T 0.0 -6.4172 4 ASP190O, GLU45T, LYS187O, LYS22T
O-V -58.4387 -12.1209 23 ARG148O, ARG43V, ARG62V, ARG66O, ARG6V, ASP136O, ASP16O, ASP16V, ASP55V, GLU138O, GLU177O, GLU19V, GLU233O, GLU58V, GLY15V, LEU143O, LEU69O, LYS12V, LYS146O, LYS169O, LYS17V, LYS42V, VAL3V
O-W -23.3884 -29.6295 23 ARG35O, ARG6W, ASP241O, ASP249O, ASP266O, ASP26O, ASP39W, ASP5W, GLU106W, GLU108W, GLU166O, GLU38W, GLU49W, HIS167O, HIS40W, LYS102W, LYS165O, LYS18W, LYS254O, LYS84W, LYS97W, LYS9O, THR41W
O-X -31.442 -73.3672 11 ARG60X, ARG70X, ASP47O, ASP60O, GLU166O, GLU61O, GLU68X, HIS167O, LYS169O, PHE67X, VAL49O
P-S -43.2408 5.5308 31 ARG21S, ARG66P, ARG72P, ARG75S, ASN39P, ASP166S, ASP189P, ASP50S, ASP52S, ASP55S, ASP6S, GLN37P, GLU190P, GLU22P, GLU32P, GLU35S, GLU45P, GLU61P, GLU65P, HIS40P, LEU50P, LYS41S, LYS5S, LYS73S, LYS76P, LYS80S, LYS83S, PHE2S, SER6P, SER8S, THR5P
Q-R -8.9062 -24.4149 3 ARG169Q, ASP140R, LYS171Q
R-S -4.4587 -11.5026 4 ARG135R, ARG58S, ARG60S, ASP145R
W-X 0.0 8.2681 2 ARG6W, ARG70X