2J02
structure of the thermus thermophilus 70s ribosome complexed with mrna, trna and paromomycin (part 3 of 4) this file contains the 30s subunit, mrna, a-, p- and e-site trnas and paromomycin for molecule ii.
Total interactions analyzed 325
Total true interactions 25
Strongest Interaction Chains J-N
Int. Res. 54
Norm. En. per Res. -5.4535
Hub Node C(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
B-C 0.0 0.0 -0.5642 -0.5642 6 0 0 102 0 3 5
B-E 0.0 0.0 -0.0748 -0.0748 7 0 0 40 0 0 2
B-H -5.1973 -35.0075 -67.5961 -107.8009 32 6 0 2668 1 17 15
C-D 0.0 0.0 -0.3927 -0.3927 8 0 0 82 0 0 7
C-E 0.0 -22.867 -12.4361 -35.3032 12 1 0 623 1 4 5
C-J 0.0 5.9496 -68.9527 -63.0031 53 0 2 3270 0 16 26
C-N -7.9253 15.1745 -218.994 -211.7448 78 9 3 8945 0 18 39
D-E 0.0 -34.6275 -19.0199 -53.6474 39 10 0 1550 4 5 8
E-H -14.4272 -10.2105 -105.841 -130.4786 61 8 2 5306 2 42 42
F-O 0.0 0.0 -1.1298 -1.1298 3 0 0 105 0 1 4
F-R -58.0208 -36.2713 -243.8 -338.0921 82 40 9 10304 1 13 22
G-I 0.0 1.9185 -33.8799 -31.9614 36 1 4 2133 0 6 8
G-K -6.0625 0.0 -62.1629 -68.2254 26 4 4 2404 0 2 7
G-U 0.0 0.0 -0.0057 -0.0057 2 0 0 6 0 1 0
H-L 0.0 0.0 -10.2864 -10.2864 10 0 0 502 0 0 1
H-Q 0.0 4.5531 -26.3759 -21.8228 14 2 0 1256 0 2 8
I-J 0.0 -0.8445 -25.8171 -26.6616 18 9 0 1258 0 9 16
I-N 0.0 0.0 -15.0474 -15.0474 9 0 0 455 0 0 0
J-N -42.7714 -34.056 -217.661 -294.4885 54 18 5 8608 3 16 36
K-R -16.6929 -17.8823 -59.3877 -93.9629 29 6 2 2497 1 12 16
L-Q 0.0 0.0 -40.7389 -40.7389 21 4 4 2105 0 0 8
M-S -11.8122 22.0764 -65.1187 -54.8546 44 5 3 3523 1 11 20
M-U 0.0 0.0 -1.3931 -1.3931 11 0 0 242 0 3 9
N-S 0.0 0.0 -0.0447 -0.0447 3 0 0 22 0 0 0
O-Q 0.0 0.0 -0.445 -0.445 9 0 0 84 0 6 5