2J00
structure of the thermus thermophilus 70s ribosome complexed with mrna, trna and paromomycin (part 1 of 4). this file contains the 30s subunit, mrna, a-, p- and e-site trnas and paromomycin for molecule i.
Total interactions analyzed 325
Total true interactions 25
Strongest Interaction Chains J-N
Int. Res. 54
Norm. En. per Res. -5.4153
Hub Node C(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
B-C 0.0 0.0 -0.5643 -0.5643 6 0 0 102 0 3 5
B-E 0.0 0.0 -0.0963 -0.0963 7 0 0 47 0 1 2
B-H -6.5459 -35.2669 -64.1484 -105.9611 32 9 0 2760 2 17 15
C-D 0.0 0.0 -0.3635 -0.3635 7 0 0 74 0 0 7
C-E 0.0 -23.4092 -13.0556 -36.4648 12 1 0 639 1 4 5
C-J 0.0 5.9737 -68.7226 -62.7489 53 0 2 3274 0 16 26
C-N -8.1927 15.2017 -218.845 -211.836 78 11 3 8934 0 18 39
D-E 0.0 -35.198 -18.9612 -54.1592 39 11 0 1558 3 5 8
E-H -13.5522 -39.8431 -115.271 -168.6663 62 9 2 5637 3 42 42
F-O 0.0 0.0 -1.3773 -1.3773 3 0 0 109 0 1 4
F-R -55.5412 -36.1652 -241.575 -333.2814 82 40 9 10331 1 13 22
G-I 0.0 1.9 -34.0736 -32.1736 36 1 4 2135 0 6 8
G-K -6.1614 0.0 -61.357 -67.5184 27 5 4 2482 0 2 7
G-U 0.0 0.0 -0.0058 -0.0058 2 0 0 6 0 1 0
H-L 0.0 0.0 -8.5617 -8.5617 9 0 0 450 0 0 1
H-Q 0.0 4.4651 -25.269 -20.8039 14 3 0 1199 0 2 8
I-J 0.0 -0.8502 -26.518 -27.3682 18 9 0 1276 0 9 16
I-N 0.0 0.0 -15.0561 -15.0561 9 0 0 458 0 0 0
J-N -42.6161 -34.0186 -215.792 -292.4266 54 19 5 8599 3 16 36
K-R -16.353 -17.8433 -59.4567 -93.653 29 5 2 2511 1 12 16
L-Q 0.0 0.0 -37.7591 -37.7591 23 6 4 2131 0 0 8
M-S -11.9497 21.7484 -65.191 -55.3923 44 5 3 3524 1 11 20
M-U 0.0 0.0 -1.4183 -1.4183 11 0 0 246 0 3 9
N-S 0.0 0.0 -0.0443 -0.0443 3 0 0 21 0 0 0
O-Q 0.0 -1.0752 -0.507 -1.5822 10 0 0 97 0 7 5