2HLD
crystal structure of yeast mitochondrial f1-atpase
Total interactions analyzed 351
Total true interactions 58
Strongest Interaction Chains G-I
Int. Res. 94
Norm. En. per Res. -3.3677
Hub Node A(5)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B 0.0 0.0 -0.019 -0.019 2 0 0 11 0 0 0
A-D -72.7154 -99.1672 -530.553 -702.4356 241 23 11 22679 6 59 73
A-E -100.3741 -9.6371 -461.017 -571.0282 208 24 10 20090 5 67 67
A-G 0.0 -2.4089 -98.0836 -100.4925 73 2 1 4760 0 24 15
A-I 0.0 0.0 -0.0018 -0.0018 3 0 0 2 0 0 0
B-E -67.2776 -48.4284 -458.807 -574.5131 196 26 12 18910 3 44 54
B-F -90.6244 -45.7965 -571.704 -708.1249 246 32 13 23898 9 78 70
B-G -4.3788 -31.0553 -31.3715 -66.8056 51 3 0 1970 1 13 4
B-N -20.3983 4.1138 -16.3063 -32.5908 24 5 0 836 0 15 11
C-D -79.005 18.9184 -468.404 -528.4906 243 17 11 20923 3 70 71
C-F -85.4894 -77.3339 -510.299 -673.1223 239 18 11 21964 7 58 73
C-G -22.793 41.6281 -44.9653 -26.1302 50 2 0 2272 1 13 12
C-I 0.0 0.0 -0.0596 -0.0596 5 0 0 18 0 1 2
D-F 0.0 0.0 -0.4202 -0.4202 7 0 0 103 0 0 1
D-G -6.9067 -28.4619 -79.2135 -114.5822 68 2 5 4245 3 24 18
D-I 0.0 0.0 -0.0098 -0.0098 2 0 0 1 0 1 3
E-G -10.0958 -39.6567 -79.1897 -128.9422 53 3 2 3750 2 12 4
E-K 0.0 2.5994 -10.614 -8.0146 18 1 0 666 0 12 18
E-N -3.025 -16.0297 -9.362 -28.4167 41 0 0 924 2 21 18
E-T 0.0 -4.5429 2 GLU504T, LYS40E
F-G -17.3474 -54.0713 -92.052 -163.4707 76 6 4 4525 3 28 15
G-H -11.9867 -2.3764 -240.607 -254.9701 92 6 9 9693 0 22 19
G-I -67.5459 5.8687 -254.885 -316.5622 94 21 16 10797 1 14 14
H-I -6.2094 -9.0637 -88.0924 -103.3654 66 7 12 4682 2 7 6
J-K 0.0 0.0 -0.0041 -0.0041 3 0 0 8 0 0 0
J-M -120.4469 -100.3897 -540.437 -761.2736 242 32 11 22489 8 57 74
J-N -87.579 -7.5965 -497.666 -592.8414 225 24 9 21445 5 74 70
J-P -3.0186 -17.4879 -81.5412 -102.0477 73 0 2 4182 4 22 15
K-N -57.3018 -48.2715 -432.89 -538.4633 191 16 11 18006 3 44 51
K-O -82.3458 -39.2376 -590.452 -712.0354 247 32 13 24461 10 80 72
K-P 0.0 -24.4797 -36.4302 -60.9099 59 0 0 2338 2 14 8
K-T 0.0 -5.0716 2 ASP124K, LYS493T
K-X 0.0 5.6322 4 ASP465X, GLU29K, GLU464X, LYS91K
L-M -67.3163 -23.0911 -661.031 -751.4384 285 26 15 28603 7 92 77
L-O -94.1098 -98.7045 -505.623 -698.4374 231 29 12 21748 8 56 71
L-P -7.8696 22.0354 -30.1683 -16.0025 42 1 0 1682 0 10 6
M-O 0.0 0.0 -11.054 -11.054 10 1 2 771 0 0 4
M-P -12.7863 -13.4092 -92.0406 -118.2361 75 8 5 4793 2 32 23
M-R 0.0 0.0 -0.0345 -0.0345 2 0 0 5 0 1 2
N-P -21.1172 -60.8156 -113.399 -195.3318 65 12 2 5105 3 19 7
O-P -3.0383 -27.9811 -78.0039 -109.0233 76 5 4 3880 2 25 15
O-X 0.0 0.7399 2 LYS176X, LYS40O
P-Q -17.9279 0.0 -129.414 -147.3419 78 4 7 5344 0 16 16
P-R -10.9542 0.0 -82.3829 -93.3371 65 2 13 4405 0 4 7
Q-R 0.0 0.0 -26.0123 -26.0123 46 0 10 1665 0 5 3
S-V -69.8988 -90.9553 33 ARG173S, ARG212S, ARG274V, ARG281S, ARG356V, ARG82S, ASN57V, ASP330V, ASP352V, ASP38S, ASP81S, GLN217S, GLN282S, GLU126V, GLU240S, GLU294V, GLU29V, GLU357S, GLU56V, GLU86S, GLU88S, HIS118V, HIS328V, HIS53V, LEU30V, LYS152V, LYS211S, LYS354V, LYS382V, LYS85S, SER277V, THR287V, VAL36S
S-W -69.3335 -3.7627 32 ALA51S, ARG130S, ARG141S, ARG142S, ARG166S, ARG190W, ARG192W, ARG199W, ARG375S, ARG72W, ASN195W, ASP196W, ASP22W, ASP299S, ASP349S, ASP65W, GLU193W, GLU224W, GLU267W, GLU309S, GLU52S, GLU68W, GLU69S, GLY45S, GLY69W, ILE138S, LEU46S, LEU68S, LEU70W, LYS134S, SER346S, VAL16W
S-Y 0.0 -0.6598 10 ARG259Y, ARG293S, ARG30Y, ASP136Y, ASP335S, ASP411S, GLU266Y, GLU294S, GLU7Y, LYS33Y
T-W -51.2518 -42.9572 24 ARG173T, ARG212T, ARG274W, ARG82T, ASN57W, ASP330W, ASP38T, ASP81T, GLN282T, GLN52W, GLU126W, GLU240T, GLU294W, GLU56W, GLU86T, HIS118W, HIS328W, HIS53W, LYS152W, LYS211T, LYS85T, PHE326W, THR287W, VAL36T
T-X -88.3931 -42.7381 39 ALA51T, ARG130T, ARG141T, ARG142T, ARG166T, ARG190X, ARG192X, ARG199X, ARG289T, ARG293T, ARG375T, ARG72X, ASN195X, ASP196X, ASP22X, ASP299T, ASP315X, ASP316X, ASP319X, ASP335T, ASP349T, ASP65X, GLU105X, GLU193X, GLU224X, GLU267X, GLU309T, GLU52T, GLU68X, GLU69T, ILE345T, ILE347T, LEU68T, LEU70X, LYS134T, LYS317T, SER337T, THR191X, VAL16X
T-Y 0.0 -34.666 5 ARG257Y, ASP335T, ASP411T, GLU294T, LYS93Y
U-V -74.1763 -0.8568 33 ALA51U, ARG130U, ARG141U, ARG142U, ARG166U, ARG190V, ARG192V, ARG199V, ARG375U, ARG400U, ARG72V, ASP196V, ASP22V, ASP299U, ASP349U, ASP65V, GLN72U, GLU193V, GLU224V, GLU267V, GLU309U, GLU341V, GLU401U, GLU52U, GLU68V, GLU69U, GLY45U, GLY69V, LEU68U, LEU70V, LYS134U, SER346U, VAL16V
U-X -77.94 -81.7927 39 ARG173U, ARG212U, ARG274X, ARG288U, ARG356X, ARG364U, ARG82U, ASN57X, ASP120X, ASP172U, ASP288X, ASP330X, ASP352X, ASP38U, ASP81U, GLN217U, GLN282U, GLU126X, GLU240U, GLU294X, GLU29X, GLU357U, GLU56X, GLU86U, GLU88U, GLY273X, HIS118X, HIS328X, HIS53X, LEU351X, LYS152X, LYS211U, LYS354X, LYS382X, LYS85U, THR287X, TYR360U, TYR368X, VAL36U
U-Y -20.9886 11.4177 10 ARG293U, ASP112Y, ASP269Y, ASP335U, ASP411U, GLU266Y, GLU294U, GLU5Y, LYS113Y, LYS4Y
V-Y 0.0 -31.1715 8 ASP315V, ASP316V, ASP386V, ASP394V, LYS11Y, LYS135Y, LYS4Y, LYS81Y
W-Y -8.7951 -31.1933 8 ARG257Y, ARG259Y, ASP238Y, ASP316W, ASP319W, ASP386W, THR264Y, VAL279W
X-Y 0.0 -45.428 4 ARG120Y, ARG9Y, ASP386X, GLU398X
Y-1 -9.8554 0.0 2 ASP148Y, SER91