2HGI
crystal structure of the 70s thermus thermophilus ribosome showing how the 16s 3'-end mimicks mrna e and p codons. this entry 2hgi contains 30s ribosomal subunit. the 50s ribosomal subunit can be found in pdb entry 2hgj.
Total interactions analyzed 253
Total true interactions 25
Strongest Interaction Chains F-H
Int. Res. 20
Norm. En. per Res. -4.5774
Hub Node F(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
Download
Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
E-F 0.0 0.0 -0.0241 -0.0241 2 0 0 13 0 1 0
E-H 0.0 0.0 -0.086 -0.086 3 0 0 32 0 0 3
E-K -3.5361 -11.4032 -63.531 -78.4703 35 8 0 2586 0 16 15
F-G 0.0 0.0 -0.0081 -0.0081 4 0 0 9 0 0 4
F-H -4.6425 -54.6197 -32.2861 -91.5483 20 15 0 1277 5 4 5
F-M 0.0 8.9534 -79.3821 -70.4287 53 14 1 3432 0 12 21
F-Q -10.2709 5.5706 -159.976 -164.6763 71 49 2 8066 0 16 37
G-H -10.7972 -4.5917 -66.0854 -81.4743 47 17 0 3192 1 7 11
H-K -17.3938 -35.5643 -96.1416 -149.0997 65 31 3 5794 4 35 41
I-R 0.0 0.0 -4.4942 -4.4942 8 5 0 435 0 4 1
I-U -64.8397 -32.5449 -163.464 -260.8486 87 108 9 11455 2 15 21
J-L 0.0 5.4821 -34.8827 -29.4006 41 2 4 1977 0 5 7
J-N 0.0 0.0 -49.7593 -49.7593 27 14 2 2093 0 2 7
K-O 0.0 0.0 -14.853 -14.853 10 7 0 654 0 0 1
K-T 0.0 6.845 -30.4748 -23.6298 15 11 0 1263 0 2 9
L-M 0.0 0.5951 -30.8599 -30.2648 21 12 0 1401 0 10 16
L-P 0.0 0.0 -0.9831 -0.9831 5 0 0 149 0 0 4
L-Q 0.0 0.0 -13.6005 -13.6005 9 1 0 439 0 0 1
M-Q -36.9019 10.8466 -183.664 -209.7193 52 57 5 8392 2 17 40
N-U -38.1458 -21.3653 -45.2167 -104.7279 34 30 2 3180 2 13 16
O-T -7.0128 0.0 -31.2757 -38.2885 21 5 3 1656 0 0 7
P-V -7.1097 13.2259 -26.4552 -20.339 41 5 1 2082 0 7 20
P-X 0.0 1.1772 -2.0034 -0.8262 10 0 0 332 0 2 9
Q-V 0.0 0.0 -0.1888 -0.1888 6 0 0 42 0 2 1
R-T 0.0 0.0 -0.6877 -0.6877 13 0 0 184 0 11 6