2GYB
structure of the 30s subunit of a secm-stalled e. coli ribosome complex obtained by fitting atomic models for rna and protein components into cryo-em map emd-1143
Total interactions analyzed 253
Total true interactions 19
Strongest Interaction Chains E-H
Int. Res. 44
Norm. En. per Res. -4.542
Hub Node C(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
B-E 0.0 0.0 -0.0267 -0.0267 2 0 0 11 0 0 0
B-H 0.0 0.0 -0.0283 -0.0283 3 0 0 13 0 1 1
C-D 0.0 5.7534 -3.7469 2.0065 5 0 0 216 0 0 4
C-E -2.5949 3.9615 -31.7005 -30.3339 30 11 0 2086 0 8 14
C-J 0.0 0.0 -10.1876 -10.1876 32 0 2 799 0 6 2
C-N 0.0 -11.4194 -11.898 -23.3174 17 2 1 860 0 6 3
D-E -6.358 -3.1197 -96.2498 -105.7275 64 9 0 4102 0 17 16
E-H -19.7202 -32.3966 -147.731 -199.8477 44 29 1 5730 2 9 7
F-R 0.0 0.0 -1.0376 -1.0376 7 0 0 97 0 0 2
G-I -7.1282 -30.0702 -43.0178 -80.2162 22 9 0 1534 2 7 5
G-K 0.0 4.3053 -23.9907 -19.6854 28 12 0 2148 0 3 8
G-M 0.0 0.0 -0.0036 -0.0036 2 0 0 4 0 0 0
H-Q 0.0 0.0 -0.5617 -0.5617 9 0 0 138 0 0 4
I-J 0.0 0.0 -1.5702 -1.5702 8 0 0 163 0 4 5
J-N 0.0 0.0 -0.0366 -0.0366 3 0 0 11 0 0 0
K-R 0.0 0.0 -0.0008 -0.0008 2 0 0 2 0 1 1
M-S 0.0 -11.2044 -47.2841 -58.4885 25 6 0 1475 0 8 13
N-S -8.0745 -2.5722 -89.5042 -100.1509 46 16 0 5293 0 12 31
O-Q 0.0 0.0 -19.5423 -19.5423 14 1 0 745 0 5 5