2GTT
crystal structure of the rabies virus nucleoprotein-rna complex
Total interactions analyzed 276
Total true interactions 57
Strongest Interaction Chains N-P
Int. Res. 5
Norm. En. per Res. -6.21
Hub Node A(5)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -43.93 -58.5586 -461.959 -564.4475 200 35 14 22707 4 53 64
A-C -15.3667 -14.4633 -60.2922 -90.1222 24 2 3 2732 1 9 7
A-J -26.4803 -12.4865 -62.7187 -101.6855 28 1 2 2988 0 13 8
A-K -41.4924 -77.659 -464.573 -583.7243 209 38 15 23058 5 52 68
A-L 0.0 0.0 -0.1321 -0.1321 4 0 0 43 0 5 3
B-C -20.7462 -56.4909 -477.311 -554.5481 206 40 14 23181 7 55 70
B-D -10.4265 -15.4149 -60.2194 -86.0608 25 8 2 2774 1 13 8
B-K -14.2959 -13.0757 -57.6342 -85.0057 25 5 2 2674 0 12 8
C-D -41.518 -48.0477 -507.183 -596.7487 210 39 14 23168 5 56 62
C-E -24.5343 -18.1943 -57.7243 -100.4529 26 2 2 2706 2 11 8
C-T -7.1723 0.0 2 LEU122C, MET126T
D-E -51.2047 -65.966 -463.841 -581.0117 203 45 14 23248 7 52 66
D-F -22.0582 -16.9781 -77.6116 -116.6479 26 5 3 3241 1 11 7
E-F -46.5555 -68.168 -480.764 -595.4875 212 42 13 23336 6 53 72
E-G -20.2035 -9.5245 -71.9615 -101.6894 27 6 2 3266 0 9 6
F-G -40.6255 -60.2869 -469.235 -570.1475 204 30 13 22446 4 54 58
F-H -22.6462 -8.9893 -56.5531 -88.1886 25 2 2 2610 0 8 6
F-Q -7.2682 0.0 2 LEU122F, MET126Q
F-R 0.0 3.0682 2 ARG130F, ARG130R
G-H -33.093 -54.7769 -481.471 -569.3409 205 40 13 22829 4 54 60
G-I -24.2563 -11.2665 -56.6969 -92.2197 26 2 2 2740 0 9 6
G-P 0.0 0.0 -48.2305 -48.2305 35 3 3 2901 0 0 0
H-I -33.4718 -63.7046 -459.601 -556.7773 210 41 15 23874 6 54 67
H-J -18.6875 -19.0006 -62.8149 -100.5031 26 1 2 3004 2 12 8
H-O 0.0 0.0 -43.8457 -43.8457 33 6 2 2867 0 0 0
H-P 0.0 0.0 -0.0042 -0.0042 3 0 0 7 0 2 1
I-J -43.5648 -61.1123 -479.704 -584.381 208 46 13 23848 7 54 69
I-K -6.2938 -11.81 -65.8581 -83.9619 27 1 2 2954 0 10 7
I-N -8.5589 0.0 -60.5964 -69.1553 44 4 3 3284 0 2 2
I-O 0.0 0.0 -0.0105 -0.0105 4 0 0 11 0 2 2
J-K -35.3041 -59.5204 -499.856 -594.6805 204 41 14 23303 5 51 66
J-M 0.0 0.0 -45.7359 -45.7359 39 2 3 3121 0 1 1
J-N 0.0 0.0 -0.2251 -0.2251 5 0 0 55 0 5 3
K-L -10.6401 0.0 -69.3625 -80.0026 44 7 4 3522 0 2 2
K-M 0.0 4.4286 -0.1801 4.2485 4 0 0 66 0 5 2
L-M -38.4488 -60.3333 -459.97 -558.7521 211 44 13 23196 7 55 64
L-N -19.1889 -21.8135 -76.8674 -117.8697 27 3 3 3242 2 12 9
L-U -23.7741 -20.3806 6 ASP362L, GLU363L, LYS364L, LYS5U, LYS9U, PHE360L
L-V -25.8195 -62.2575 28 ARG254L, ARG270L, ARG357L, ARG358L, ARG361L, ARG400L, ARG415V, ASP24V, GLU20V, GLU255L, GLU255V, GLU266V, GLU274L, GLU337V, GLU356L, GLU365L, GLU398L, GLU403V, GLY353L, GLY414V, HIS262V, HIS431L, LYS18V, LYS247L, LYS263V, LYS352L, LYS444V, THR354L
M-N -33.9731 -64.3057 -518.204 -616.4828 226 47 15 24472 6 56 69
M-O -6.0324 -11.9179 -85.3931 -103.3434 28 12 3 3736 0 11 7
M-V -16.4847 -12.6351 6 ASP362M, GLU363M, GLU365M, LYS364M, LYS9V, PHE360M
N-O -50.8672 -53.2381 -481.845 -585.9503 201 35 14 22203 6 52 62
N-P -22.5467 -8.5031 0.0 -31.0498 5 0 0 0 0 0 0
O-P -34.3221 -40.0616 -137.2 -211.5836 125 31 7 9961 0 27 24
O-Q -15.812 -14.3918 5 ASP362Q, GLU363Q, LYS364Q, LYS9O, PHE360Q
P-Q -42.0351 -48.3734 31 ARG254Q, ARG270Q, ARG357Q, ARG358Q, ARG361Q, ARG400Q, ARG415P, ASP24P, GLU20P, GLU255P, GLU255Q, GLU266P, GLU274Q, GLU337P, GLU347Q, GLU348Q, GLU356Q, GLU365Q, GLU403P, GLY351Q, GLY353Q, GLY414P, HIS262P, HIS431Q, LEU416P, LYS18P, LYS247Q, LYS263P, LYS352Q, LYS444P, PHE261P
P-R -15.8132 -20.0856 6 ASP362R, GLU363R, GLU365R, LYS364R, LYS9P, PHE360R
Q-R -52.3751 -58.0264 28 ARG254R, ARG270R, ARG357R, ARG358R, ARG361R, ARG415Q, ASP24Q, GLU20Q, GLU255Q, GLU255R, GLU266Q, GLU274R, GLU337Q, GLU347R, GLU356R, GLU365R, GLU403Q, GLY353R, GLY414Q, HIS262Q, HIS431R, LYS18Q, LYS247R, LYS263Q, LYS352R, LYS444Q, PHE261Q, THR354R
Q-S -10.5116 -15.4325 6 ASP362S, GLU363S, GLU365S, LYS364S, LYS9Q, PHE360S
R-S -38.1247 -75.7982 29 ARG254S, ARG270S, ARG357S, ARG358S, ARG361S, ARG415R, ARG423S, ASP24R, GLU20R, GLU255R, GLU255S, GLU266R, GLU274S, GLU337R, GLU347S, GLU356S, GLU403R, GLY353S, GLY414R, HIS262R, HIS431S, LYS18R, LYS247S, LYS263R, LYS352S, LYS444R, LYS5R, THR354S, THR445R
R-T -16.1192 -10.5442 8 ARG361T, ASP362T, GLU363T, GLU365T, LYS364T, LYS5R, LYS9R, PHE360T
S-T -32.9483 -40.4123 27 ARG254T, ARG270T, ARG357T, ARG358T, ARG361T, ARG415S, ASP24S, GLU20S, GLU255S, GLU255T, GLU266S, GLU274T, GLU337S, GLU347T, GLU356T, GLU365T, GLU403S, GLY353T, GLY414S, HIS262S, HIS431T, LYS18S, LYS247T, LYS263S, LYS352T, LYS444S, THR354T
S-U -17.0521 -11.4329 6 ASP362U, GLU363U, GLU365U, LYS364U, LYS9S, PHE360U
T-U -48.0404 -52.0765 29 ARG254U, ARG270U, ARG357U, ARG358U, ARG361U, ARG415T, ASP24T, GLU20T, GLU255T, GLU255U, GLU266T, GLU274U, GLU337T, GLU347U, GLU356U, GLU365U, GLU403T, GLY351U, GLY353U, GLY414T, HIS262T, HIS431U, LEU416T, LYS18T, LYS247U, LYS263T, LYS352U, LYS444T, THR354U
T-V -15.7298 -8.7279 4 ASP362V, GLU363V, LYS9T, PHE360V
U-V -43.0899 -67.3444 34 ARG254V, ARG270V, ARG357V, ARG358V, ARG361V, ARG400V, ARG415U, ARG423V, ASP24U, GLU20U, GLU255U, GLU255V, GLU266U, GLU274V, GLU337U, GLU347V, GLU348V, GLU356V, GLU398V, GLU403U, GLY351V, GLY353V, GLY414U, HIS262U, HIS431V, ILE6U, LEU416U, LYS18U, LYS247V, LYS263U, LYS352V, LYS444U, THR354V, THR445U