2GHO

recombinant thermus aquaticus rna polymerase for structural studies

• Total interactions analyzed: 6
• Total true interactions: 6
• Strongest Interaction:
  • Chains: C-D
  • Int. Res.: 457
  • Norm. En. per Res.: -0.691
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-2.3619	0.0	-33.2613	-35.6232	85	1	0	1538	0	0	0
A-C	-12.2481	0.0	-39.8565	-52.1046	110	1	0	2080	0	0	0
A-D	0.0	0.0	-0.0007	-0.0007	2	0	0	2	0	0	0
B-C	0.0	0.0	-1.424	-1.424	13	0	0	186	0	0	0
B-D	0.0	0.0	-5.5289	-5.5289	58	0	0	641	0	0	0
C-D	-59.1663	0.0	-256.623	-315.7893	457	11	0	12568	0	0	0

Interface residues

• A-B: ALA13A, ALA13B, ALA226A, ALA226B, ALA230A, ALA8B, ARG146A, ARG30A, ARG30B, ARG42A, ARG42B, ASN212A, ASN212B, ASN223A, ASN227A, ASN227B, ASN38A, ASN38B, GLN16B, GLU229A, GLU22B, GLU29A, GLY147A, GLY17B, GLY21B, GLY31A, GLY31B, GLY37B, HIS221A, HIS221B, ILE43A, ILE43B, LEU211A, LEU218A, LEU218B, LEU222A, LEU222B, LEU232A, LEU233A, LEU25A, LEU25B, LEU36A, LEU36B, LEU40A, LEU40B, LYS219A, LYS219B, PHE11A, PHE11B, PHE225A, PHE225B, PHE23A, PHE23B, PHE32A, PHE32B, PRO228A, PRO228B, PRO234A, PRO39A, PRO39B, PRO9A, PRO9B, SER231A, SER46A, SER46B, SER47B, SER4B, THR12A, THR12B, THR14B, THR15B, THR235A, THR35A, THR35B, TYR224A, TYR224B, VAL10A, VAL10B, VAL148A, VAL215A, VAL215B, VAL24A, VAL24B, VAL34A, VAL34B
• A-C: ALA169A, ALA178A, ALA747C, ALA828C, ARG175A, ARG176A, ARG198A, ARG41A, ARG42A, ARG610C, ARG627C, ARG640C, ARG642C, ARG644C, ARG697C, ARG939C, ARG978C, ASN163A, ASN38A, ASP168A, ASP183A, ASP193A, ASP607C, ASP698C, ASP74A, ASP857C, ASP863C, ASP937C, ASP976C, GLN180A, GLN829C, GLU133A, GLU134A, GLU182A, GLU64A, GLU692C, GLU73A, GLU748C, GLU856C, GLU940C, GLU981C, GLY31A, GLY33A, GLY37A, GLY608C, GLY70A, GLY746C, GLY864C, GLY935C, GLY977C, GLY980C, HIS63A, HIS860C, ILE170A, ILE199A, ILE43A, ILE572C, ILE68A, ILE745C, ILE799C, LEU132A, LEU192A, LEU36A, LEU45A, LEU62A, LEU695C, LEU80A, LEU861C, LYS194A, LYS605C, LYS696C, LYS72A, LYS83A, LYS938C, PHE179A, PHE65A, PHE934C, PRO152A, PRO39A, PRO641C, PRO69A, PRO862C, PRO866C, SER46A, SER66A, THR131A, THR35A, THR609C, THR67A, THR865C, THR979C, TRP200A, TYR150A, TYR628C, VAL151A, VAL177A, VAL181A, VAL34A, VAL604C, VAL606C, VAL61A, VAL643C, VAL645C, VAL71A, VAL75A, VAL76A, VAL800C, VAL801C, VAL855C, VAL936C
• A-D: GLY31A, HIS564D
• B-C: ARG30B, ARG978C, ASN38B, ASP857C, GLU856C, GLY31B, GLY977C, GLY980C, PRO39B, PRO854C, THR35B, THR979C, VAL34B
• B-D: ALA153B, ALA553D, ALA561D, ALA563D, ARG175B, ARG176B, ARG185B, ARG189B, ARG42B, ARG576D, ASN554D, ASN81B, ASP168B, ASP183B, ASP191B, ASP391D, ASP394D, ASP398D, ASP556D, GLN188B, GLN345D, GLU154B, GLU182B, GLU395D, GLU431D, GLU557D, GLU77B, GLU84B, GLY187B, HIS564D, ILE170B, ILE392D, ILE79B, LEU186B, LEU429D, LEU45B, LEU522D, LEU559D, LEU560D, LEU80B, LYS355D, LYS393D, LYS549D, LYS83B, PHE552D, PHE65B, PRO152B, SER46B, THR184B, THR190B, TRP397D, TYR150B, VAL174B, VAL177B, VAL396D, VAL430D, VAL551D, VAL76B
• C-D: ALA1007C, ALA1039C, ALA1042C, ALA1045C, ALA1046C, ALA1094C, ALA1096C, ALA11D, ALA13D, ALA1451D, ALA1474D, ALA225D, ALA358D, ALA414D, ALA447C, ALA447D, ALA455D, ALA464D, ALA468D, ALA499C, ALA555C, ALA558C, ALA687C, ALA712C, ALA733D, ALA737D, ALA786D, ALA791D, ALA794D, ALA798D, ALA850C, ALA909C, ALA929D, ALA934D, ARG1008C, ARG1031C, ARG1063C, ARG1086C, ARG1470D, ARG243D, ARG322D, ARG324D, ARG331D, ARG337D, ARG356D, ARG35D, ARG419D, ARG428C, ARG432C, ARG492D, ARG505D, ARG557C, ARG6D, ARG713C, ARG738D, ARG771D, ARG787D, ARG796D, ARG82D, ARG879C, ARG87D, ARG89D, ARG9D, ASN1107C, ASN326D, ASN412D, ASN448C, ASN500C, ASN556C, ASN683C, ASN723D, ASN727D, ASN740D, ASN845C, ASN872C, ASN881C, ASP1058C, ASP1075C, ASP1098C, ASP1103C, ASP1106C, ASP1110C, ASP1457D, ASP232D, ASP240D, ASP333D, ASP426C, ASP429C, ASP448D, ASP450D, ASP452D, ASP493D, ASP553C, ASP554C, ASP55D, ASP661D, ASP662D, ASP680C, ASP686C, ASP714C, ASP753C, ASP837C, ASP968C, ASP976C, GLN1018C, GLN1019C, GLN1030C, GLN1050C, GLN1068C, GLN1093C, GLN1100C, GLN325D, GLN345D, GLN389D, GLN433D, GLN436D, GLN453D, GLN465D, GLN471D, GLN498C, GLN743D, GLN746D, GLN765C, GLN834C, GLU1002C, GLU1034C, GLU1036C, GLU1041C, GLU1051C, GLU1074C, GLU1078C, GLU1083C, GLU1091C, GLU1104C, GLU1458D, GLU360D, GLU431D, GLU445C, GLU467D, GLU4D, GLU507D, GLU520C, GLU551C, GLU57D, GLU685C, GLU711C, GLU763D, GLU764C, GLU766C, GLU772D, GLU911C, GLU928D, GLU936D, GLU942C, GLU984C, GLY1011C, GLY1028C, GLY1029C, GLY1033C, GLY1044C, GLY1073C, GLY1114C, GLY1454D, GLY1469D, GLY1475D, GLY1477D, GLY241D, GLY242D, GLY329D, GLY336D, GLY343D, GLY421D, GLY432D, GLY446C, GLY450C, GLY451D, GLY565D, GLY647D, GLY655D, GLY659D, GLY681C, GLY718C, GLY739D, GLY752C, GLY763C, GLY773D, GLY785D, GLY790D, GLY836C, GLY847C, GLY875C, GLY883C, GLY908C, GLY91D, GLY927D, GLY931D, GLY951C, GLY970C, GLY985C, HIS1006C, HIS101D, HIS1047C, HIS418D, HIS431C, HIS552C, HIS784D, HIS812D, HIS889C, HIS999C, ILE1016C, ILE1055C, ILE1070C, ILE1071C, ILE10D, ILE1111C, ILE1467D, ILE1472D, ILE18D, ILE291D, ILE340D, ILE422D, ILE435D, ILE449C, ILE494D, ILE53D, ILE656D, ILE658D, ILE660D, ILE676C, ILE688C, ILE744D, ILE781D, ILE852C, ILE885C, ILE926D, ILE987C, LEU1015C, LEU1021C, LEU1040C, LEU1049C, LEU1053C, LEU1088C, LEU1092C, LEU1095C, LEU1097C, LEU1102C, LEU12D, LEU1462D, LEU1468D, LEU1471D, LEU229D, LEU233D, LEU312D, LEU316D, LEU327D, LEU328D, LEU359D, LEU361D, LEU367D, LEU37D, LEU417D, LEU420D, LEU460D, LEU550C, LEU650D, LEU717C, LEU729D, LEU747D, LEU774D, LEU777D, LEU795D, LEU839C, LEU871C, LEU874C, LEU882C, LEU886C, LEU950C, LEU952C, LEU969C, LEU974C, LYS1004C, LYS1056C, LYS1072C, LYS1090C, LYS1105C, LYS1455D, LYS17D, LYS330D, LYS363D, LYS368D, LYS369D, LYS380D, LYS38D, LYS3D, LYS506D, LYS508D, LYS54D, LYS644D, LYS716C, LYS750C, LYS762C, LYS788D, LYS7D, LYS838C, LYS846C, LYS851C, LYS949C, LYS971C, MET1005C, MET1035C, MET1052C, MET236D, MET357D, MET472D, MET677C, MET732D, MET880C, MET90D, PHE1027C, PHE1032C, PHE1085C, PHE1112C, PHE323D, PHE362D, PHE365D, PHE425C, PHE449D, PHE463D, PHE549C, PHE648D, PHE679C, PHE684C, PHE726D, PHE761C, PHE762D, PHE770D, PHE780D, PHE906C, PHE983C, PRO1020C, PRO1077C, PRO1082C, PRO1473D, PRO227D, PRO230D, PRO235D, PRO344D, PRO364D, PRO415D, PRO439D, PRO440C, PRO444C, PRO459D, PRO521C, PRO536C, PRO678C, PRO725D, PRO751C, PRO757D, PRO767C, PRO769C, PRO873C, PRO877C, PRO982C, PRO986C, SER1009C, SER1057C, SER1080C, SER1084C, SER1478D, SER14D, SER335D, SER338D, SER434D, SER461D, SER462D, SER491D, SER651D, SER654D, SER760C, SER768C, SER769D, SER782D, SER783D, SER83D, SER878C, THR1010C, THR1017C, THR1048C, THR1054C, THR1101C, THR1476D, THR313D, THR36D, THR416D, THR649D, THR652D, THR653D, THR657D, THR715C, THR775D, THR793D, THR797D, THR888C, THR910C, TRP1038C, TYR1043C, TYR1067C, TYR334D, TYR34D, TYR435C, TYR56D, TYR645D, TYR682C, TYR724D, TYR779D, TYR88D, VAL1001C, VAL1037C, VAL1076C, VAL1081C, VAL1087C, VAL1089C, VAL1099C, VAL1109C, VAL1466D, VAL226D, VAL228D, VAL237D, VAL332D, VAL339D, VAL341D, VAL342D, VAL379D, VAL430C, VAL441C, VAL456D, VAL458D, VAL522C, VAL539C, VAL5D, VAL764D, VAL776D, VAL808D, VAL835C, VAL848C, VAL849C, VAL85D, VAL876C, VAL8D, VAL905C, VAL930D, VAL932D, VAL933D, VAL972C, VAL988C, VAL989C