2FUG
crystal structure of the hydrophilic domain of respiratory complex i from thermus thermophilus
Total interactions analyzed 496
Total true interactions 87
Strongest Interaction Chains 4-7
Int. Res. 26
Norm. En. per Res. -4.9044
Hub Node 3(7)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
1-2 -122.7906 -135.1412 -703.76 -961.6917 222 48 16 28616 11 77 80
1-3 -48.1409 -43.2972 -346.381 -437.8191 152 29 6 16688 7 43 52
1-4 0.0 0.0 -0.0003 -0.0003 2 0 0 1 0 0 1
1-7 0.0 2.3449 -20.0695 -17.7246 26 0 1 1204 0 3 17
2-3 -12.2866 59.3731 -142.642 -95.5555 58 14 0 5519 2 16 19
2-7 -33.5669 -54.8805 -151.149 -239.5964 80 21 8 7397 3 27 19
2-M 0.0 2.9153 -0.0719 2.8434 9 0 0 47 0 9 13
3-4 -17.7049 -12.6243 -251.567 -281.8962 84 22 5 10632 2 25 20
3-5 -18.5128 -26.8798 -215.024 -260.4167 103 13 1 9248 2 31 28
3-9 -10.8366 -65.5378 -156.043 -232.4175 61 6 1 6177 4 31 26
3-7 -23.1867 -28.4026 -221.243 -272.8323 96 24 4 9568 9 53 60
3-J 0.0 2.1316 -6.2278 -4.0962 11 0 0 350 0 9 8
3-M 0.0 -4.1856 -2.29 -6.4756 14 0 0 284 0 8 11
3-U 0.0 -0.2323 6 ARG651U, GLU4853, GLU4953, GLU4983, GLU646U, LYS330U
4-5 -182.0399 -56.3104 -664.276 -902.6263 229 93 6 29462 14 93 81
4-6 -97.5996 -46.7697 -269.383 -413.7523 104 30 4 12037 5 17 29
4-9 -32.071 -47.1556 -230.729 -309.9556 97 11 4 9834 2 41 21
4-7 -16.1353 -45.5936 -65.7847 -127.5136 26 4 1 2667 6 10 13
5-6 -19.6274 -7.7841 -65.6746 -93.0862 45 6 1 2895 0 11 1
5-9 -9.1868 -55.7485 -185.046 -249.9813 57 7 6 6638 3 12 12
6-9 -44.9542 -11.2593 -329.22 -385.4335 121 41 14 14389 2 34 41
6-J 0.0 -12.0883 -76.2477 -88.336 47 16 0 4476 0 23 16
9-7 0.0 21.7471 -93.8681 -72.121 62 2 3 4834 0 23 24
9-J 0.0 -5.7129 -0.0643 -5.7772 2 0 0 10 0 4 2
7-M -2.9084 3.3333 -44.3603 -43.9354 34 0 1 1612 0 10 10
7-N 0.0 5.1069 2 ASP84N, GLU1137
A-B -108.7904 -135.0128 -704.958 -948.7612 222 45 16 28483 11 78 79
A-C -50.0234 -45.0337 -345.353 -440.4101 152 29 6 16712 7 43 53
A-D 0.0 0.0 -0.0003 -0.0003 2 0 0 1 0 0 1
A-H 0.0 2.2623 -19.9688 -17.7065 27 0 1 1206 0 3 17
A-U -17.7092 -0.8135 5 ARG316U, ARG429A, GLU314U, GLU427A, LYS428A
A-X 0.0 -11.3522 6 ARG169X, ARG273A, ASP308A, GLU17X, GLU304A, GLU305A
A-Y 0.0 -6.0942 2 ARG152Y, GLU305A
B-C -12.1397 61.6125 -151.748 -102.2752 59 15 0 5523 2 16 18
B-H -32.2267 -54.184 -152.837 -239.2476 80 21 8 7435 3 27 19
C-D -22.0489 -11.0707 -256.061 -289.1806 85 20 5 10648 2 25 20
C-E -16.5926 -26.2737 -217.684 -260.5504 102 10 1 9193 2 31 28
C-G -11.0935 -68.1 -153.09 -232.2834 60 8 1 6192 5 31 26
C-H -14.976 -29.3635 -214.369 -258.7086 96 22 4 9506 9 53 60
D-E -165.5028 -51.1179 -654.013 -870.6337 229 91 6 29410 14 93 82
D-F -103.3354 -48.0117 -279.537 -430.8841 104 38 4 12126 5 17 29
D-G -36.8472 -78.8822 -229.444 -345.1734 96 12 4 9892 2 41 21
D-H -15.2625 -45.4354 -65.2145 -125.9124 26 4 1 2659 6 10 13
D-T 0.0 13.7274 5 ASP202D, ASP5T, ASP6T, GLU44T, LYS288D
D-U -3.9476 -26.1735 5 ARG724U, ARG746U, GLU298D, GLU730U, LYS191D
D-Z -7.079 2.3641 4 ALA129Z, LYS250D, LYS27Z, TYR257D
E-F -20.3692 -7.7035 -64.5022 -92.5749 45 6 1 2904 0 11 1
E-G -14.4782 -56.767 -182.158 -253.4032 57 5 6 6629 4 12 12
E-T 0.0 -1.9108 2 ASP114T, LYS81E
E-Z 0.0 -8.3343 3 ARG2E, ASP84E, GLU113Z
F-G -47.7309 -12.2247 -327.646 -387.6016 120 41 14 14398 2 34 40
G-H 0.0 21.4829 -95.5827 -74.0998 62 2 3 4870 0 23 24
J-K -105.6386 -136.0847 -706.353 -948.0763 222 47 16 28559 11 79 78
J-L -51.1202 -41.4323 -352.899 -445.4514 152 30 6 16699 6 43 53
J-M 0.0 0.0 -0.0003 -0.0003 2 0 0 1 0 0 1
J-Q 0.0 2.347 5 ASP383J, HIS350J, HIS90Q, LYS373J, LYS78Q
K-L -16.3764 60.2397 -152.8 -108.9367 59 20 0 5551 2 16 19
K-Q -34.1956 -55.3129 10 ARG114Q, ARG121Q, ASP98K, GLU102K, GLU110K, GLY109K, HIS90Q, LYS107Q, PRO74K, TYR70K
L-M -17.9313 -10.6427 -255.937 -284.511 84 19 5 10650 2 25 20
L-N -21.5136 -27.4994 17 ARG133L, ARG163N, ARG189N, ARG270L, ASP132L, ASP29L, GLU129L, GLU136L, GLU169N, GLU250L, GLU251L, GLU273L, HIS428L, LYS185N, LYS190N, THR182N, VAL30L
L-P -5.5847 -64.9177 12 ARG241L, ARG243L, ARG270L, ARG86P, ASP118L, ASP123L, GLU248L, GLU71P, GLU74P, GLU85P, HIS167L, LYS166L
L-Q -22.1212 -27.5184 23 ARG180L, ARG205L, ARG85Q, ARG88Q, ASP165L, ASP71Q, GLU158L, GLU179L, GLU204L, GLU32Q, GLU34Q, GLU65Q, GLY64Q, HIS163L, HIS167L, HIS168L, HIS208L, HIS76Q, HIS90Q, HIS92Q, LYS166L, LYS33Q, LYS78Q
M-N -163.8136 -51.7426 51 ARG116N, ARG147N, ARG171N, ARG189N, ARG193N, ARG249M, ARG367M, ARG371M, ARG409M, ARG73M, ARG87N, ARG91N, ASN112N, ASN306M, ASP120N, ASP140N, ASP360M, ASP408M, ASP51N, ASP62N, GLN379M, GLU139N, GLU154N, GLU18N, GLU333M, GLU341M, GLU352M, GLU67M, GLU71M, GLU73N, GLY54N, GLY85N, HIS336M, HIS63M, HIS72M, LEU174N, LYS103M, LYS148N, LYS177N, LYS190N, LYS329M, LYS339M, LYS369M, LYS68M, PHE113N, PRO145N, SER238M, SER363M, TYR150N, TYR192N, TYR366M
M-O -79.8133 -48.6462 14 ARG143O, ARG167M, ARG83O, ARG84M, ASN120O, ASP408M, GLU161M, GLU49O, HIS58M, HIS63M, ILE59M, LYS87O, THR64M, TYR121O
M-P -33.4441 -49.0823 19 ALA62P, ARG174M, ARG314M, ARG36P, ASP158M, ASP181M, GLN166M, GLN77M, GLU106P, GLU161M, GLU180M, GLU185M, GLU189M, GLY165M, HIS170M, HIS38P, LYS179M, LYS34P, PHE100P
M-Q -15.7878 -45.6499 9 ARG314M, ARG43Q, ARG46Q, ARG75Q, ASP39Q, GLU318M, GLU45Q, HIS315M, HIS76Q
N-O -21.4104 -7.7681 8 ASN119O, ASP140N, GLU139N, LEU152N, LYS86O, LYS87O, THR155N, TYR121O
N-P -16.879 -55.7456 9 ARG160N, ARG163N, ASP128P, ASP135P, GLU161N, GLU71P, GLU92P, THR157N, TYR66P
O-P -47.5771 -11.4576 21 ARG143O, ARG148P, ARG166O, ARG97P, ASN119O, ASP123P, ASP128P, GLN125O, GLU120P, GLU125P, GLU145O, GLU149P, GLU165O, GLU168O, GLY116O, HIS38P, LEU96P, LYS144P, LYS156O, SER114O, TYR136O
P-Q 0.0 21.4089 11 ARG167P, ARG43Q, ASP36Q, GLU169P, GLU171P, GLU34Q, GLU45Q, GLU85P, HIS46P, LYS33Q, LYS52P
S-T -121.9863 -138.1154 52 ALA177S, ALA84T, ARG104S, ARG139S, ARG140S, ARG147T, ARG175S, ARG196S, ARG24T, ARG260S, ARG32T, ARG433S, ARG438S, ASN343S, ASP109S, ASP138T, ASP143S, ASP339S, GLN135T, GLU108S, GLU123T, GLU137S, GLU139T, GLU143T, GLU178T, GLU180T, GLU193S, GLU21T, GLU24S, GLU265S, GLU351S, GLU59T, GLU94T, GLU95T, GLY136S, GLY194S, HIS172S, HIS174S, HIS174T, HIS175T, HIS350S, LEU86T, LYS17T, LYS214S, LYS259S, LYS89T, TRP437S, TYR131S, TYR141T, TYR69T, VAL179T, VAL263S
S-U -53.4934 -45.4547 30 ARG156U, ARG162U, ARG196S, ARG200S, ARG205U, ARG360S, ARG397S, ARG440U, ARG46U, ASP201U, ASP383S, CYS353S, GLU158U, GLU193S, GLU204U, GLU351S, GLU361S, GLU385S, GLU395S, GLY206U, HIS115U, HIS183U, HIS208U, HIS350S, LYS185U, LYS355S, LYS373S, LYS78U, PHE202U, SER398S
S-Z 0.0 2.3404 5 ASP383S, HIS350S, HIS90Z, LYS373S, LYS78Z
T-U -17.6252 59.6953 10 ARG205U, ARG440U, ASP201U, ASP215U, GLU192U, GLU198U, GLU47T, GLU59T, PHE66T, THR56T
T-Z -32.8752 -54.2529 10 ARG114Z, ARG121Z, ASP98T, GLU102T, GLU110T, GLY109T, HIS90Z, LYS107Z, PRO74T, TYR70T
U-V -18.4446 -11.5871 10 ARG161U, ASP118U, ASP132U, GLU136U, GLU322V, GLU333V, HIS115U, HIS336V, LYS329V, MET321V
U-W -18.7508 -25.8247 17 ARG133U, ARG163W, ARG189W, ARG270U, ASP132U, ASP29U, GLU129U, GLU136U, GLU169W, GLU250U, GLU251U, GLU273U, GLY187W, HIS428U, LYS185W, LYS190W, VAL30U
U-Y -11.2833 -79.7742 13 ARG178U, ARG241U, ARG243U, ARG270U, ARG86Y, ASP118U, ASP123U, GLU248U, GLU71Y, GLU74Y, GLU85Y, HIS167U, LYS166U
U-Z -16.0028 -26.7799 23 ARG180U, ARG205U, ARG85Z, ARG88Z, ASP165U, ASP71Z, GLU158U, GLU179U, GLU204U, GLU32Z, GLU34Z, GLU65Z, GLY64Z, HIS163U, HIS167U, HIS168U, HIS208U, HIS76Z, HIS90Z, HIS92Z, LYS166U, LYS33Z, LYS78Z
V-W -142.2902 -50.1238 50 ARG116W, ARG147W, ARG171W, ARG189W, ARG193W, ARG249V, ARG367V, ARG371V, ARG409V, ARG73V, ARG87W, ARG91W, ASN112W, ASN306V, ASP120W, ASP140W, ASP360V, ASP51W, ASP62W, GLN379V, GLU139W, GLU154W, GLU18W, GLU333V, GLU341V, GLU352V, GLU67V, GLU71V, GLU73W, GLY54W, GLY85W, HIS336V, HIS63V, HIS72V, LEU174W, LEU378V, LYS103V, LYS148W, LYS177W, LYS190W, LYS329V, LYS339V, LYS369V, LYS68V, PRO145W, SER238V, SER363V, TYR150W, TYR192W, TYR366V
V-X -85.6472 -47.4787 14 ARG143X, ARG167V, ARG83X, ARG84V, ASN120X, ASP408V, GLU161V, GLU49X, HIS58V, HIS63V, ILE59V, LYS87X, THR64V, TYR121X
V-Y -32.3653 -49.2362 19 ALA62Y, ARG174V, ARG314V, ARG36Y, ASP158V, ASP181V, GLN166V, GLN77V, GLU106Y, GLU161V, GLU180V, GLU185V, GLU189V, GLY165V, HIS170V, HIS38Y, LYS179V, LYS34Y, PHE100Y
V-Z -16.216 -46.849 9 ARG314V, ARG43Z, ARG46Z, ARG75Z, ASP39Z, GLU318V, GLU45Z, HIS315V, HIS76Z
W-X -21.9894 -7.8505 8 ASN119X, ASP140W, GLU139W, LEU152W, LYS86X, LYS87X, THR155W, TYR121X
W-Y -16.2374 -56.4382 9 ARG160W, ARG163W, ASP128Y, ASP135Y, GLU161W, GLU71Y, GLU92Y, THR157W, TYR66Y
X-Y -46.8874 -12.4886 21 ARG143X, ARG148Y, ARG166X, ARG97Y, ASP123Y, ASP128Y, GLN125X, GLN153X, GLU120Y, GLU125Y, GLU145X, GLU149Y, GLU165X, GLU168X, GLY116X, HIS38Y, LEU96Y, LYS144Y, LYS156X, SER114X, TYR136X
Y-Z 0.0 21.5569 11 ARG167Y, ARG43Z, ASP36Z, GLU169Y, GLU171Y, GLU34Z, GLU45Z, GLU85Y, HIS46Y, LYS33Z, LYS52Y