2FKD

crystal structure of the c-terminal domain of bacteriophage 186 repressor

• Total interactions analyzed: 91
• Total true interactions: 28
• Strongest Interaction:
  • Chains: D-M
  • Int. Res.: 84
  • Norm. En. per Res.: -5.6248
• Hub Node: A(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-119.6324	-33.0039	-330.275	-482.9113	88	27	6	11983	0	25	21
A-C	-16.3156	-33.9508	-75.7088	-125.9751	51	6	1	3786	3	23	17
A-D	0.0	0.0	-0.485	-0.485	6	0	0	81	0	0	5
A-M	-10.003	-35.7478	-92.1204	-137.8713	51	5	1	4057	5	24	21
B-C	0.0	0.0	-0.4422	-0.4422	8	0	0	90	0	2	5
B-D	-35.5985	-29.42	-91.1427	-156.1612	51	7	1	4167	4	24	20
B-N	-11.2646	-35.475	-88.2955	-135.0351	54	7	1	3946	4	24	19
C-E	-13.0254	-38.5289	-84.1486	-135.7029	52	6	1	3931	4	23	18
C-N	-96.8474	-32.4794	-332.736	-462.0628	88	25	6	11774	0	25	22
D-F	-12.3235	-47.4356	-61.8646	-121.6237	52	12	2	3619	8	23	21
D-M	-110.3632	-39.8805	-322.243	-472.4867	84	31	5	11657	0	24	20
E-G	-25.648	-41.5963	-79.6234	-146.8677	51	9	1	3824	2	23	18
E-L	-90.4348	-26.7491	-318.783	-435.9669	88	24	5	11314	0	26	22
E-N	0.0	0.0	-0.1329	-0.1329	10	0	0	70	0	1	5
F-H	-20.7709	-24.7755	-91.6276	-137.174	51	4	1	3991	2	24	18
F-K	-115.0556	-33.6883	-316.18	-464.9239	88	30	4	11478	0	24	20
F-M	0.0	0.0	-1.0138	-1.0138	10	0	0	161	0	2	5
G-I	-32.01	-29.4057	-84.8887	-146.3044	54	6	1	4021	6	24	19
G-J	-100.62	-28.848	-311.972	-441.44	86	28	5	11634	0	25	22
G-L	0.0	0.0	-0.2015	-0.2015	8	0	0	56	0	1	5
H-I	-76.6372	-34.2472	-330.262	-441.1464	90	21	5	12047	0	26	21
H-J	-9.7905	-35.8057	-76.9765	-122.5727	54	8	1	3778	3	24	18
H-K	0.0	0.0	-0.0211	-0.0211	4	0	0	18	0	0	5
I-J	0.0	0.0	-0.1349	-0.1349	8	0	0	42	0	0	5
I-K	-15.3966	-33.3014	-85.333	-134.031	52	7	1	3952	3	23	18
J-L	-9.9544	-33.2911	-77.7856	-121.0311	48	8	1	3772	5	23	20
K-M	0.0	-8.8668	-65.3609	-74.2277	53	2	2	3266	2	23	17
L-N	-17.5379	-29.3544	-86.5507	-133.443	52	6	1	3803	4	25	20

Interface residues

• A-B: ALA108A, ALA108B, ALA120A, ALA120B, ALA85A, ALA85B, ARG122A, ARG122B, ARG183A, ARG183B, ARG87A, ARG87B, ASN192A, ASN192B, ASP101A, ASP101B, ASP107A, ASP107B, ASP84A, ASP84B, GLN103A, GLN103B, GLN109A, GLN109B, GLU153A, GLU153B, GLU190A, GLU190B, GLY125A, GLY125B, GLY139A, GLY139B, GLY186A, GLY186B, GLY90A, GLY90B, ILE127A, ILE127B, ILE88A, ILE88B, LEU104A, LEU104B, LEU115A, LEU115B, LEU140A, LEU140B, LEU154A, LEU154B, LYS102A, LYS102B, LYS113A, LYS113B, LYS126A, LYS126B, LYS86A, LYS86B, PHE110A, PHE110B, PHE111A, PHE111B, PHE129A, PHE129B, PHE91A, PHE91B, SER105A, SER105B, SER189A, SER189B, SER83A, SER83B, THR112A, THR112B, THR92A, THR92B, TYR128A, TYR128B, TYR188A, TYR188B, VAL106A, VAL106B, VAL184A, VAL184B, VAL185A, VAL185B, VAL187A, VAL187B, VAL191A, VAL191B
• A-C: ALA134A, ALA148C, ALA165A, ARG152C, ARG160A, ARG183A, ASP131A, ASP138A, ASP177C, CYS173C, GLN133A, GLU146C, GLU153A, GLU172A, GLU172C, GLU95C, GLU96C, GLY139A, GLY147C, GLY159A, GLY167C, GLY174C, HIS163A, ILE145C, ILE149C, ILE175A, ILE178C, ILE97C, LEU136A, LEU140A, LEU154A, LEU157A, LEU162A, LYS113A, LYS156A, LYS161A, LYS168C, PHE171C, PRO158A, PRO170A, PRO170C, SER135A, SER137A, SER150C, SER94C, THR155A, TRP141A, VAL164A, VAL164C, VAL169C, VAL185A
• A-D: ASN192A, ASN192D, GLU124A, LYS168A, LYS168D, VAL191D
• A-M: ALA134M, ALA148A, ALA165M, ARG152A, ARG160M, ARG183M, ASP131M, ASP138M, ASP177A, CYS173A, GLU146A, GLU153M, GLU172A, GLU172M, GLU95A, GLU96A, GLY139M, GLY147A, GLY159M, GLY167A, GLY174A, HIS163M, ILE145A, ILE149A, ILE175M, ILE178A, ILE97A, LEU136M, LEU140M, LEU154M, LEU157M, LEU162A, LEU162M, LYS113M, LYS156M, LYS161M, LYS168A, PHE171A, PRO158M, PRO170A, PRO170M, SER135M, SER137M, SER150A, SER94A, THR155M, TRP141M, VAL164A, VAL164M, VAL169A, VAL185M
• B-C: ASN192B, ASN192C, GLU124B, GLU124C, LYS168B, LYS168C, VAL191B, VAL191C
• B-D: ALA134B, ALA148D, ALA165B, ARG152D, ARG160B, ARG183B, ASP131B, ASP138B, ASP177D, CYS173D, GLN133B, GLU146D, GLU153B, GLU172B, GLU172D, GLU95D, GLU96D, GLY139B, GLY147D, GLY159B, GLY167D, GLY174D, HIS163B, ILE145D, ILE149D, ILE175B, ILE178D, ILE97D, LEU136B, LEU140B, LEU154B, LEU157B, LEU162B, LYS113B, LYS156B, LYS161B, LYS168D, PHE171D, PRO158B, PRO170B, PRO170D, SER135B, SER137B, SER150D, SER94D, THR155B, TRP141B, VAL164B, VAL164D, VAL169D, VAL185B
• B-N: ALA134N, ALA148B, ALA165N, ARG152B, ARG160N, ARG183N, ASP131N, ASP138N, ASP177B, CYS173B, GLN133N, GLU146B, GLU153N, GLU172B, GLU172N, GLU95B, GLU96B, GLY139N, GLY147B, GLY159N, GLY167B, GLY174B, HIS163N, ILE145B, ILE149B, ILE175N, ILE178B, ILE97B, LEU136N, LEU140N, LEU154N, LEU157N, LEU162B, LEU162N, LYS113N, LYS156N, LYS161N, LYS168B, LYS99B, PHE171B, PRO158N, PRO170B, PRO170N, SER135N, SER137N, SER150B, SER94B, THR112N, THR155N, TRP141N, VAL164B, VAL164N, VAL169B, VAL185N
• C-E: ALA134C, ALA148E, ALA165C, ARG152E, ARG160C, ARG183C, ASP131C, ASP138C, ASP177E, CYS173E, GLN133C, GLU146E, GLU153C, GLU172C, GLU172E, GLU95E, GLU96E, GLY139C, GLY147E, GLY159C, GLY166E, GLY167E, GLY174E, HIS163C, ILE145E, ILE149E, ILE178E, ILE97E, LEU136C, LEU140C, LEU154C, LEU157C, LEU162C, LYS113C, LYS156C, LYS161C, LYS168E, PHE171E, PRO158C, PRO170C, PRO170E, SER135C, SER137C, SER150E, SER94E, THR112C, THR155C, TRP141C, VAL164C, VAL164E, VAL169E, VAL185C
• C-N: ALA108C, ALA108N, ALA120C, ALA120N, ALA85C, ALA85N, ARG122C, ARG122N, ARG183C, ARG183N, ARG87C, ARG87N, ASN192C, ASN192N, ASP101C, ASP101N, ASP107C, ASP107N, ASP84C, ASP84N, GLN103C, GLN103N, GLN109C, GLN109N, GLU153C, GLU153N, GLU190C, GLU190N, GLY125C, GLY125N, GLY139C, GLY139N, GLY186C, GLY186N, GLY90C, GLY90N, ILE127C, ILE127N, ILE151C, ILE88C, ILE88N, LEU104C, LEU104N, LEU115C, LEU115N, LEU140C, LEU140N, LYS102C, LYS102N, LYS113C, LYS113N, LYS126C, LYS126N, LYS86C, LYS86N, PHE110C, PHE110N, PHE111C, PHE111N, PHE129C, PHE129N, PHE91C, PHE91N, SER105C, SER105N, SER189C, SER189N, SER83C, SER83N, THR112C, THR112N, THR92C, THR92N, TRP141C, TYR128C, TYR128N, TYR188C, TYR188N, VAL106C, VAL106N, VAL184C, VAL184N, VAL185C, VAL185N, VAL187C, VAL187N, VAL191C, VAL191N
• D-F: ALA134D, ALA148F, ALA165D, ARG152F, ARG160D, ARG183D, ASP131D, ASP138D, ASP177F, CYS173F, GLU146F, GLU153D, GLU172D, GLU172F, GLU95F, GLU96F, GLY139D, GLY147F, GLY159D, GLY167F, GLY174F, HIS163D, ILE145F, ILE149F, ILE97F, LEU136D, LEU140D, LEU154D, LEU157D, LEU162D, LYS113D, LYS156D, LYS161D, LYS168F, LYS99F, PHE171F, PRO114D, PRO158D, PRO170F, SER135D, SER137D, SER150F, SER94F, THR112D, THR155D, THR92F, TRP141D, VAL164D, VAL164F, VAL169F, VAL184D, VAL185D
• D-M: ALA108D, ALA108M, ALA120D, ALA120M, ALA85D, ALA85M, ARG122D, ARG122M, ARG183D, ARG183M, ARG87D, ARG87M, ASN192D, ASN192M, ASP101D, ASP101M, ASP107D, ASP107M, ASP84D, ASP84M, GLN103D, GLN103M, GLN109D, GLN109M, GLU153D, GLU153M, GLU190D, GLU190M, GLY125D, GLY139D, GLY139M, GLY186D, GLY186M, GLY90D, GLY90M, ILE127D, ILE127M, ILE88D, ILE88M, LEU104D, LEU104M, LEU115D, LEU115M, LEU140D, LEU140M, LYS102D, LYS102M, LYS113D, LYS113M, LYS126D, LYS126M, LYS86D, LYS86M, PHE110D, PHE110M, PHE111D, PHE111M, PHE129D, PHE129M, PHE91D, PHE91M, SER105D, SER105M, SER189D, SER189M, SER83D, SER83M, THR112D, THR112M, THR92D, TYR128D, TYR128M, TYR188D, TYR188M, VAL106D, VAL106M, VAL184D, VAL184M, VAL185D, VAL185M, VAL187D, VAL187M, VAL191D, VAL191M
• E-G: ALA134E, ALA148G, ALA165E, ARG152G, ARG160E, ARG183E, ASP131E, ASP138E, ASP177G, CYS173G, GLN133E, GLU124G, GLU146G, GLU153E, GLU172E, GLU172G, GLU95G, GLU96G, GLY139E, GLY147G, GLY159E, GLY167G, GLY174G, HIS163E, ILE145G, ILE149G, ILE175E, ILE97G, LEU136E, LEU154E, LEU157E, LEU162E, LYS113E, LYS156E, LYS161E, LYS168G, LYS99G, PHE171G, PRO158E, PRO170G, SER135E, SER137E, SER150G, SER94G, THR112E, THR155E, TRP141E, VAL164E, VAL164G, VAL169G, VAL185E
• E-L: ALA108E, ALA108L, ALA120E, ALA120L, ALA85E, ALA85L, ARG122E, ARG122L, ARG183E, ARG183L, ARG87E, ARG87L, ASN192E, ASN192L, ASP101E, ASP101L, ASP107E, ASP107L, ASP84E, ASP84L, GLN103E, GLN103L, GLN109E, GLN109L, GLU153E, GLU153L, GLU190E, GLU190L, GLY125E, GLY125L, GLY139E, GLY139L, GLY186E, GLY186L, GLY90E, GLY90L, ILE127E, ILE127L, ILE151E, ILE88E, ILE88L, LEU104E, LEU104L, LEU115E, LEU115L, LEU140E, LEU140L, LYS102E, LYS102L, LYS113E, LYS113L, LYS126E, LYS126L, LYS86E, LYS86L, PHE110E, PHE110L, PHE111E, PHE111L, PHE129E, PHE129L, PHE91E, PHE91L, SER105E, SER105L, SER189E, SER189L, SER83E, SER83L, THR112E, THR112L, THR92E, THR92L, TRP141E, TYR128E, TYR128L, TYR188E, TYR188L, VAL106E, VAL106L, VAL184E, VAL184L, VAL185E, VAL185L, VAL187E, VAL187L, VAL191E, VAL191L
• E-N: ASN192E, ASN192N, GLU124E, GLU124N, GLY125E, GLY125N, LYS168E, LYS168N, VAL191E, VAL191N
• F-H: ALA134F, ALA148H, ALA165F, ARG152H, ARG160F, ARG183F, ASP131F, ASP138F, ASP177H, CYS173H, GLN133F, GLU146H, GLU153F, GLU172F, GLU172H, GLU95H, GLU96H, GLY139F, GLY147H, GLY159F, GLY167H, GLY174H, HIS163F, ILE145H, ILE149H, ILE175F, ILE178H, ILE97H, LEU136F, LEU154F, LEU157F, LEU162F, LEU162H, LYS113F, LYS156F, LYS161F, LYS168H, PHE171H, PRO158F, PRO170F, PRO170H, SER135F, SER137F, SER150H, SER94H, THR155F, TRP141F, VAL164F, VAL164H, VAL169H, VAL185F
• F-K: ALA108F, ALA108K, ALA120F, ALA120K, ALA85F, ALA85K, ARG122F, ARG122K, ARG152F, ARG183F, ARG183K, ARG87F, ARG87K, ASN192F, ASN192K, ASP101F, ASP101K, ASP107F, ASP107K, ASP84F, ASP84K, GLN103F, GLN103K, GLN109F, GLN109K, GLU153F, GLU153K, GLU190F, GLU190K, GLY125F, GLY125K, GLY139F, GLY139K, GLY186F, GLY186K, GLY90F, GLY90K, ILE127F, ILE127K, ILE151F, ILE88F, ILE88K, LEU104F, LEU104K, LEU115F, LEU115K, LEU140F, LEU140K, LYS102F, LYS102K, LYS113F, LYS113K, LYS126F, LYS126K, LYS86F, LYS86K, PHE110F, PHE110K, PHE111F, PHE111K, PHE129F, PHE129K, SER105F, SER105K, SER189F, SER189K, SER83F, SER83K, THR112F, THR112K, THR92F, THR92K, TRP141F, TYR128F, TYR128K, TYR188F, TYR188K, VAL106F, VAL106K, VAL130F, VAL184F, VAL184K, VAL185F, VAL185K, VAL187F, VAL187K, VAL191F, VAL191K
• F-M: ASN192F, ASN192M, GLU124F, GLU124M, GLY125F, GLY125M, LYS168F, LYS168M, VAL191F, VAL191M
• G-I: ALA134G, ALA148I, ALA165G, ARG152I, ARG160G, ARG183G, ASP131G, ASP138G, ASP177I, CYS173I, GLN133G, GLU146I, GLU153G, GLU172G, GLU172I, GLU95I, GLU96I, GLY139G, GLY147I, GLY159G, GLY166I, GLY167I, GLY174I, HIS163G, ILE145I, ILE149I, ILE175G, ILE178I, ILE97I, LEU136G, LEU154G, LEU157G, LEU162G, LEU162I, LYS113G, LYS156G, LYS161G, LYS168I, LYS99I, PHE171G, PHE171I, PRO158G, PRO170G, PRO170I, SER135G, SER137G, SER150I, SER94I, THR155G, TRP141G, VAL164G, VAL164I, VAL169I, VAL185G
• G-J: ALA108G, ALA108J, ALA120G, ALA120J, ALA85G, ALA85J, ARG122G, ARG122J, ARG183G, ARG183J, ARG87G, ARG87J, ASN192G, ASN192J, ASP101G, ASP101J, ASP107G, ASP107J, ASP84G, ASP84J, GLN103G, GLN103J, GLN109G, GLN109J, GLU153G, GLU153J, GLU190G, GLU190J, GLY125G, GLY125J, GLY139G, GLY139J, GLY186G, GLY186J, GLY90G, GLY90J, ILE127G, ILE127J, ILE151J, ILE88G, ILE88J, LEU104G, LEU104J, LEU115G, LEU115J, LEU140G, LEU140J, LYS102G, LYS102J, LYS113G, LYS113J, LYS126G, LYS126J, LYS86G, LYS86J, PHE110G, PHE110J, PHE111G, PHE111J, PHE129G, PHE129J, PHE91J, SER105G, SER105J, SER189G, SER189J, SER83G, SER83J, THR112G, THR112J, THR92G, THR92J, TYR128G, TYR128J, TYR188G, TYR188J, VAL106G, VAL106J, VAL184G, VAL184J, VAL185G, VAL185J, VAL187G, VAL187J, VAL191G, VAL191J
• G-L: ASN192G, ASN192L, GLU124G, GLU124L, LYS168G, LYS168L, VAL191G, VAL191L
• H-I: ALA108H, ALA108I, ALA120H, ALA120I, ALA85H, ALA85I, ARG122H, ARG122I, ARG152I, ARG183H, ARG183I, ARG87H, ARG87I, ASN192H, ASN192I, ASP101H, ASP101I, ASP107H, ASP107I, ASP84H, ASP84I, GLN103H, GLN103I, GLN109H, GLN109I, GLU153H, GLU153I, GLU190H, GLU190I, GLY125H, GLY125I, GLY139H, GLY139I, GLY186H, GLY186I, GLY90H, GLY90I, ILE127H, ILE127I, ILE151I, ILE88H, ILE88I, LEU104H, LEU104I, LEU115H, LEU115I, LEU140H, LEU140I, LEU154I, LYS102H, LYS102I, LYS113H, LYS113I, LYS126H, LYS126I, LYS86H, LYS86I, PHE110H, PHE110I, PHE111H, PHE111I, PHE129H, PHE129I, PHE91H, PHE91I, SER105H, SER105I, SER189H, SER189I, SER83H, SER83I, THR112H, THR112I, THR92H, THR92I, TRP141I, TYR128H, TYR128I, TYR188H, TYR188I, VAL106H, VAL106I, VAL184H, VAL184I, VAL185H, VAL185I, VAL187H, VAL187I, VAL191H, VAL191I
• H-J: ALA134H, ALA148J, ALA165H, ARG152J, ARG160H, ARG183H, ASP131H, ASP138H, ASP177J, CYS173J, GLN133H, GLU124J, GLU146J, GLU153H, GLU172H, GLU172J, GLU95J, GLU96J, GLY139H, GLY147J, GLY159H, GLY167J, GLY174J, HIS163H, ILE145J, ILE149J, ILE175H, ILE178J, ILE97J, LEU136H, LEU140H, LEU154H, LEU157H, LEU162H, LYS113H, LYS156H, LYS161H, LYS168J, LYS99J, PHE171J, PRO158H, PRO170H, PRO170J, SER135H, SER137H, SER150J, SER94J, THR112H, THR155H, TRP141H, VAL164H, VAL164J, VAL169J, VAL185H
• H-K: ASN192H, ASN192K, LYS168H, LYS168K
• I-J: ASN192I, ASN192J, GLU124I, GLU124J, LYS168I, LYS168J, VAL191I, VAL191J
• I-K: ALA134I, ALA148K, ALA165I, ARG152K, ARG160I, ARG183I, ASP131I, ASP138I, ASP177K, CYS173K, GLN133I, GLU146K, GLU153I, GLU172I, GLU172K, GLU95K, GLU96K, GLY139I, GLY147K, GLY159I, GLY167K, GLY174K, HIS163I, ILE145K, ILE149K, ILE175I, ILE178K, ILE97K, LEU136I, LEU154I, LEU157I, LEU162I, LEU162K, LYS113I, LYS156I, LYS161I, LYS168K, LYS99K, PHE171K, PRO158I, PRO170K, SER135I, SER137I, SER150K, SER94K, THR112I, THR155I, TRP141I, VAL164I, VAL164K, VAL169K, VAL185I
• J-L: ALA134J, ALA148L, ALA165J, ARG152L, ARG160J, ARG183J, ASP131J, ASP138J, ASP177L, CYS173L, GLN133J, GLU146L, GLU153J, GLU172J, GLU172L, GLU95L, GLU96L, GLY139J, GLY147L, GLY159J, GLY167L, GLY174L, HIS163J, ILE145L, ILE149L, ILE178L, ILE97L, LEU136J, LEU154J, LEU157J, LEU162J, LYS113J, LYS156J, LYS168L, LYS99L, PHE171L, PRO158J, PRO170L, SER135J, SER137J, SER150L, SER94L, THR155J, TRP141J, VAL164J, VAL164L, VAL169L, VAL185J
• K-M: ALA134K, ALA148M, ALA165K, ARG152M, ARG160K, ARG183K, ASP131K, ASP138K, ASP177M, CYS173M, GLN133K, GLU146M, GLU153K, GLU172K, GLU172M, GLU95M, GLU96M, GLY139K, GLY159K, GLY167M, GLY174M, HIS163K, ILE145M, ILE149M, ILE97M, LEU115K, LEU136K, LEU140K, LEU154K, LEU157K, LEU162K, LEU93M, LYS113K, LYS156K, LYS161K, LYS168M, LYS99M, PHE171M, PRO114K, PRO158K, PRO170M, SER135K, SER137K, SER150M, SER94M, THR112K, THR155K, THR92M, TRP141K, VAL164M, VAL169M, VAL184K, VAL185K
• L-N: ALA134L, ALA148N, ALA165L, ARG152N, ARG160L, ARG183L, ASP131L, ASP138L, ASP177N, CYS173N, GLN133L, GLU146N, GLU153L, GLU172L, GLU172N, GLU95N, GLU96N, GLY139L, GLY147N, GLY159L, GLY167N, GLY174N, HIS163L, ILE145N, ILE149N, ILE178N, ILE97N, LEU136L, LEU140L, LEU154L, LEU157L, LEU162L, LYS113L, LYS156L, LYS161L, LYS168N, LYS99N, PHE171N, PRO158L, PRO170L, PRO170N, SER135L, SER137L, SER150N, SER94N, THR112L, THR155L, TRP141L, VAL164L, VAL164N, VAL169N, VAL185L