2FJG

structure of the g6 fab, a phage derived fab fragment, in complex with vegf

• Total interactions analyzed: 15
• Total true interactions: 11
• Strongest Interaction:
  • Chains: W-B
  • Int. Res.: 34
  • Norm. En. per Res.: -4.6828
• Hub Node: V(5)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
V-W	-122.5737	-61.3631	917.193	733.2561	115	27	9	16190	4	16	17
V-L	0.0	0.0	-10.4996	-10.4996	11	0	0	337	0	0	0
V-H	-16.2751	-16.0181	-114.705	-146.9982	33	10	2	4023	1	6	2
V-A	-3.9873	-2.2553	-3.8261	-10.0687	25	4	0	1241	0	3	5
V-B	0.0	0.0	-92.2226	-92.2226	33	1	0	2832	0	1	0
W-L	-3.6455	-1.0847	-32.3321	-37.0623	23	2	0	1262	0	2	5
W-H	0.0	0.0	-92.0789	-92.0789	34	2	0	2832	0	1	0
W-A	0.0	0.0	-11.1744	-11.1744	10	0	0	330	0	0	0
W-B	-22.5316	-12.5413	-124.141	-159.214	34	14	2	4171	1	6	2
L-H	-17.6987	-26.6734	-490.766	-535.1381	195	9	17	19416	1	17	15
A-B	-17.4891	-29.8221	-491.861	-539.1721	197	10	17	19488	2	17	16

Interface residues

• V-W: ARG23V, ARG23W, ARG56V, ARG56W, ARG82V, ARG82W, ASN62V, ASN62W, ASP19V, ASP19W, ASP34V, ASP34W, ASP63V, ASP63W, CYS26V, CYS26W, CYS51V, CYS51W, CYS57V, CYS57W, CYS60V, CYS60W, CYS61V, CYS61W, CYS68V, CYS68W, GLN22V, GLN22W, GLN79V, GLN79W, GLN89V, GLN89W, GLN98V, GLN98W, GLU30V, GLU30W, GLU64V, GLU64W, GLU93V, GLU93W, GLY58V, GLY58W, GLY59V, GLY59W, GLY92V, GLY92W, HIS27V, HIS27W, ILE29V, ILE29W, ILE35V, ILE35W, ILE46V, ILE46W, ILE76V, ILE76W, ILE80V, ILE80W, ILE83V, ILE83W, ILE91V, ILE91W, LEU32V, LEU32W, LEU54V, LEU54W, LEU66W, LYS16V, LYS16W, LYS48V, LYS48W, MET18V, MET18W, MET55V, MET55W, MET78V, MET78W, MET81V, MET81W, MET94V, MET94W, PHE17V, PHE17W, PHE47V, PHE47W, PHE96V, PHE96W, PRO28V, PRO28W, PRO49V, PRO49W, PRO53V, PRO53W, SER24V, SER24W, SER50V, SER50W, THR31V, THR31W, THR77V, THR77W, TYR21V, TYR21W, TYR25V, TYR25W, VAL14V, VAL14W, VAL15V, VAL15W, VAL20V, VAL20W, VAL33V, VAL33W, VAL52V, VAL52W
• V-L: GLN87V, HIS86V, LEU54L, LYS48V, PHE53L, PRO85V, SER50L, SER56L, TYR49L, TYR55L, TYR92L
• V-H: ALA106H, ARG82V, ARG98H, ASP31H, GLN79V, GLN87V, GLN89V, GLY88V, GLY92V, HIS86V, HIS90V, ILE29H, ILE46V, ILE83V, ILE91V, LEU103H, LYS48V, LYS84V, MET81V, PHE101H, PHE102H, PHE47V, PHE99H, PRO104H, PRO49V, PRO53H, PRO85V, SER30H, THR28H, TRP33H, TYR105H, TYR32H, VAL100H
• V-A: ALA32A, ARG105V, ASN62V, ASP28A, ASP63V, CYS104V, CYS61V, GLN27A, GLU103V, GLU64V, GLU67V, GLY65V, GLY68A, LEU66V, LYS107V, LYS108V, PRO106V, SER30A, SER91A, THR31A, THR93A, THR94A, TYR25V, TYR92A, VAL29A
• V-B: ALA54B, ARG23V, ASN62V, ASP31B, ASP63V, CYS104V, CYS26V, CYS60V, CYS61V, GLN22V, GLU103V, GLU64V, GLY55B, GLY56B, HIS27V, ILE51B, LEU66V, MET18V, PHE101B, PHE17V, PHE99B, PRO104B, PRO53B, SER24V, SER30B, THR52B, THR58B, TRP33B, TYR105B, TYR21V, TYR25V, TYR32B, TYR57B
• W-L: ALA32L, ARG105W, ASN62W, ASP28L, ASP63W, CYS104W, CYS61W, GLN27L, GLU103W, GLU64W, GLY65W, GLY68L, LEU66W, LYS107W, PRO106W, SER30L, SER91L, THR31L, THR93L, THR94L, TYR25W, TYR92L, VAL29L
• W-H: ALA54H, ARG23W, ASN62W, ASP31H, ASP63W, CYS104W, CYS26W, CYS60W, CYS61W, GLN22W, GLU103W, GLU64W, GLY55H, GLY56H, HIS27W, ILE51H, ILE70H, LEU66W, MET18W, PHE101H, PHE17W, PHE99H, PRO104H, PRO53H, SER24W, SER30H, THR52H, THR58H, TRP33H, TYR105H, TYR21W, TYR25W, TYR32H, TYR57H
• W-A: GLN87W, HIS86W, LYS48W, PHE53A, PRO85W, SER50A, SER56A, TYR49A, TYR55A, TYR92A
• W-B: ALA106B, ARG82W, ARG98B, ASP108B, ASP31B, GLN79W, GLN87W, GLN89W, GLY88W, GLY92W, HIS86W, HIS90W, ILE29B, ILE46W, ILE83W, ILE91W, LEU103B, LYS48W, LYS84W, MET81W, PHE101B, PHE102B, PHE47W, PHE99B, PRO104B, PRO49W, PRO53B, PRO85W, SER30B, THR28B, TRP33B, TYR105B, TYR32B, VAL100B
• L-H: ALA106H, ALA130L, ALA132H, ALA143H, ALA144H, ALA175H, ALA32L, ALA34L, ALA43L, ALA49H, ALA51L, ALA54H, ALA61H, ALA97H, ARG142L, ARG38H, ARG98H, ASN137L, ASN138L, ASN158L, ASP108H, ASP122L, ASP151H, ASP167L, ASP170L, ASP1L, ASP62H, CYS134L, CYS147H, CYS88L, CYS96H, GLN100L, GLN112H, GLN124L, GLN160L, GLN166L, GLN178H, GLN37L, GLN38L, GLN39H, GLN89L, GLN90L, GLU123L, GLU161L, GLU165L, GLU46H, GLU6H, GLY101L, GLY111H, GLY113H, GLY128L, GLY146H, GLY157L, GLY169H, GLY181H, GLY41L, GLY42H, GLY44H, GLY50H, GLY55H, GLY56H, GLY99L, HIS171H, HIS35H, ILE117L, ILE48L, ILE51H, LEU103H, LEU125L, LEU131H, LEU135L, LEU136L, LEU145H, LEU148H, LEU175L, LEU177H, LEU179L, LEU181L, LEU182H, LEU185H, LEU45H, LEU46L, LEU47L, LEU54L, LYS103L, LYS126L, LYS150H, LYS207L, LYS216H, LYS217H, LYS221H, LYS39L, LYS42L, LYS43H, LYS45L, LYS65H, MET107H, PHE101H, PHE102H, PHE116L, PHE118L, PHE129H, PHE139L, PHE173H, PHE209L, PHE53L, PHE98L, PHE99H, PRO104H, PRO119L, PRO120L, PRO130H, PRO133H, PRO174H, PRO40L, PRO44L, PRO53H, PRO95L, PRO96L, SER114L, SER121L, SER127H, SER127L, SER131L, SER134H, SER135H, SER159L, SER162L, SER168L, SER174L, SER176L, SER177L, SER179H, SER180H, SER184H, SER186H, SER187H, SER208L, SER222H, SER30L, SER50L, SER56L, SER91L, THR129L, THR142H, THR164L, THR172H, THR172L, THR178L, THR180L, THR190H, THR31L, THR52H, THR85L, THR93L, THR94L, THR97L, TRP110H, TRP33H, TRP35L, TRP36H, TRP47H, TYR105H, TYR109H, TYR173L, TYR183H, TYR36L, TYR49L, TYR55L, TYR57H, TYR59H, TYR60H, TYR86L, TYR87L, TYR92L, TYR95H, VAL100H, VAL115L, VAL128H, VAL132L, VAL133L, VAL149H, VAL163L, VAL170H, VAL176H, VAL188H, VAL189H, VAL191H, VAL218H, VAL29L, VAL2H, VAL33L, VAL37H, VAL48H, VAL93H
• A-B: ALA106B, ALA130A, ALA132B, ALA143B, ALA144B, ALA175B, ALA32A, ALA34A, ALA43A, ALA49B, ALA51A, ALA54B, ALA61B, ALA97B, ARG142A, ARG38B, ARG98B, ASN137A, ASN138A, ASN158A, ASP108B, ASP122A, ASP151B, ASP167A, ASP170A, ASP1A, ASP62B, CYS134A, CYS147B, CYS88A, CYS96B, GLN100A, GLN112B, GLN124A, GLN160A, GLN166A, GLN178B, GLN37A, GLN38A, GLN39B, GLN89A, GLN90A, GLU123A, GLU161A, GLU165A, GLU46B, GLU6B, GLY101A, GLY111B, GLY113B, GLY146B, GLY157A, GLY169B, GLY41A, GLY42B, GLY44B, GLY50B, GLY55B, GLY56B, GLY99A, HIS171B, HIS35B, ILE117A, ILE48A, ILE51B, LEU103B, LEU125A, LEU131B, LEU135A, LEU136A, LEU145B, LEU148B, LEU175A, LEU177B, LEU179A, LEU181A, LEU182B, LEU185B, LEU196B, LEU45B, LEU46A, LEU47A, LEU54A, LYS103A, LYS126A, LYS150B, LYS169A, LYS207A, LYS216B, LYS221B, LYS39A, LYS42A, LYS43B, LYS45A, LYS65B, MET107B, PHE101B, PHE102B, PHE116A, PHE118A, PHE129B, PHE139A, PHE173B, PHE209A, PHE53A, PHE98A, PHE99B, PRO104B, PRO119A, PRO120A, PRO130B, PRO133B, PRO174B, PRO40A, PRO44A, PRO53B, PRO95A, PRO96A, SER114A, SER121A, SER127A, SER127B, SER131A, SER134B, SER135B, SER159A, SER162A, SER168B, SER174A, SER176A, SER177A, SER179B, SER180B, SER184B, SER186B, SER187B, SER193B, SER208A, SER222B, SER30A, SER50A, SER56A, SER91A, THR129A, THR142B, THR164A, THR172A, THR172B, THR178A, THR180A, THR190B, THR31A, THR52B, THR58B, THR85A, THR93A, THR94A, THR97A, TRP110B, TRP33B, TRP35A, TRP36B, TRP47B, TYR105B, TYR109B, TYR173A, TYR183B, TYR36A, TYR49A, TYR55A, TYR57B, TYR59B, TYR60B, TYR86A, TYR87A, TYR92A, TYR95B, VAL100B, VAL115A, VAL128B, VAL132A, VAL133A, VAL149B, VAL163A, VAL170B, VAL176B, VAL188B, VAL189B, VAL191B, VAL214B, VAL218B, VAL29A, VAL2B, VAL33A, VAL37B, VAL48B, VAL93B