2FIF

crystal structure of a bovine rabex-5 fragment complexed with ubiquitin

• Total interactions analyzed: 15
• Total true interactions: 9
• Strongest Interaction:
  • Chains: C-D
  • Int. Res.: 59
  • Norm. En. per Res.: -4.7185
• Hub Node: B(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-32.0794	-64.829	-193.731	-290.6395	63	11	6	7725	1	30	16
A-C	-11.0029	4.6447	-30.2245	-36.5827	23	3	0	1216	0	6	8
A-D	0.0	0.0	-0.0087	-0.0087	2	0	0	3	0	0	0
B-C	0.0	0.0	-26.453	-26.453	18	2	0	1240	0	5	4
B-D	-4.3597	0.0	-5.8692	-10.2289	13	0	0	321	2	7	15
B-E	-20.1989	-6.2062	-119.737	-146.1422	41	5	1	4002	2	13	6
B-F	0.0	0.0	-10.9333	-10.9333	12	1	0	561	0	1	0
C-D	-28.0099	-58.7957	-191.588	-278.3937	59	9	7	7845	2	29	18
E-F	-25.6868	-54.8593	-169.486	-250.0321	54	6	6	6962	1	27	15

Interface residues

• A-B: ALA46A, ALA58B, ALA68B, ALA70B, ARG42A, ARG47B, ARG60B, ARG63B, ARG72A, ASN60A, ASP54B, GLN2A, GLN40A, GLN48B, GLN49A, GLN50B, GLN52B, GLN62A, GLN62B, GLN73B, GLU53B, GLU56B, GLU59B, GLU64A, GLU64B, GLU65B, GLU66B, GLU67B, GLY10A, GLY47A, HIS44B, HIS68A, ILE3A, ILE44A, ILE51B, ILE61A, LEU43A, LEU50A, LEU57B, LEU61B, LEU67A, LEU69A, LEU71A, LEU73A, LEU8A, LYS11A, LYS48A, LYS49B, LYS63A, LYS6A, PHE45A, PHE4A, PHE69B, SER65A, SER72B, THR12A, THR66A, THR7A, THR9A, TRP39B, TRP55B, TYR43B, VAL70A
• A-C: ALA46A, ARG42A, ARG54A, ARG72A, GLN49A, GLU34C, GLU51A, GLY10C, GLY47A, ILE13C, ILE44A, LEU43A, LEU50A, LEU8C, LYS11C, LYS48A, LYS6C, PHE45A, THR12C, THR14C, THR7C, THR9C, TYR59A
• A-D: GLY47A, TRP55D
• B-C: ALA58B, ARG60B, ARG63B, GLN62B, GLU59B, GLU64B, GLU65B, GLU67B, GLY10C, ILE36C, LEU57B, LEU61B, LEU71C, LEU73C, LEU8C, LYS11C, THR7C, THR9C
• B-D: ALA58D, ARG60B, ARG63B, ARG63D, GLN62D, GLU53B, GLU56B, GLU59D, GLU66D, GLU67B, LEU57B, PHE69D, TRP55D
• B-E: ALA30B, ALA46E, ARG40B, ARG54E, ASN28B, ASN60E, ASP21E, ASP52E, ASP58E, CYS19B, CYS23B, CYS35B, CYS38B, GLN49E, GLN62E, GLU51E, GLY24B, GLY27B, GLY53E, ILE61E, LEU17B, LEU18B, LEU50E, LEU56E, LYS37B, LYS48E, PHE34B, PHE45E, PRO19E, PRO29B, SER15B, SER20E, SER36B, SER57E, THR22E, THR55E, TRP31B, TRP39B, TYR25B, TYR26B, TYR59E
• B-F: ALA30F, ASN28F, GLN32F, GLU16B, GLY33F, LEU17B, PHE34F, PRO29F, SER15B, TRP31F, TRP39F, TYR43F
• C-D: ALA46C, ALA58D, ALA68D, ALA70D, ARG40D, ARG42C, ARG47D, ARG60D, ARG63D, ARG72C, ASN60C, ASP54D, GLN2C, GLN40C, GLN48D, GLN49C, GLN50D, GLN52D, GLN62C, GLN62D, GLU53D, GLU56D, GLU59D, GLU64C, GLU64D, GLU65D, GLU66D, GLU67D, GLY10C, GLY47C, HIS68C, ILE3C, ILE44C, ILE51D, ILE61C, LEU43C, LEU57D, LEU61D, LEU67C, LEU69C, LEU71C, LEU73C, LEU8C, LYS48C, LYS49D, LYS63C, LYS6C, PHE45C, PHE4C, PHE69D, SER65C, SER71D, THR66C, THR7C, THR9C, TRP39D, TRP55D, TYR43D, VAL70C
• E-F: ALA46E, ALA58F, ALA68F, ALA70F, ARG42E, ARG47F, ARG60F, ARG63F, ARG72E, ASN60E, ASP54F, GLN40E, GLN48F, GLN49E, GLN50F, GLN52F, GLN62E, GLN62F, GLU53F, GLU56F, GLU59F, GLU64E, GLU64F, GLU65F, GLU66F, GLU67F, GLY10E, GLY47E, HIS68E, ILE44E, ILE51F, ILE61E, LEU43E, LEU57F, LEU61F, LEU67E, LEU69E, LEU71E, LEU73E, LEU8E, LYS48E, LYS63E, LYS6E, PHE45E, PHE4E, PHE69F, SER65E, THR66E, THR7E, THR9E, TRP39F, TRP55F, TYR43F, VAL70E