2EIM
zinc ion binding structure of bovine heart cytochrome c oxidase in the fully reduced state
Total interactions analyzed 325
Total true interactions 94
Strongest Interaction Chains R-V
Int. Res. 54
Norm. En. per Res. -6.5002
Hub Node A(15)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -65.6212 -76.0375 -837.427 -979.0856 299 33 35 36974 5 37 41
A-C -80.4418 -84.8863 -750.363 -915.691 245 28 22 29856 6 17 21
A-D -20.8088 -19.0127 -315.913 -355.7345 148 11 14 12657 2 19 21
A-E 0.0 0.0 -0.0937 -0.0937 10 0 0 29 0 2 1
A-F -67.9509 -16.2187 -365.653 -449.8226 103 14 9 14080 0 13 5
A-G -22.1128 2.3003 -84.1327 -103.9452 40 2 0 3471 0 11 3
A-H 0.0 0.0 -19.4193 -19.4193 22 1 0 921 0 3 0
A-I 0.0 0.0 -19.0905 -19.0905 17 0 0 602 0 0 4
A-J 0.0 0.0 -40.7972 -40.7972 36 1 3 2157 0 2 1
A-K -17.1889 2.1307 -64.9748 -80.033 42 1 0 2720 0 2 4
A-L -49.06 -1.1347 -461.555 -511.7498 139 24 12 17818 0 22 16
A-M -89.2419 -25.5 -318.084 -432.8259 96 22 5 11833 3 10 7
A-P 0.0 0.0 -0.0536 -0.0536 5 0 0 25 0 0 1
A-S 0.0 0.0 -0.0035 -0.0035 2 0 0 4 0 0 0
A-T 0.0 0.0 -164.478 -164.478 72 9 7 7090 0 2 1
B-C 0.0 0.0 -1.1143 -1.1143 9 0 0 111 0 1 2
B-D -34.2171 -3.784 -202.303 -240.3041 81 9 3 8055 3 20 18
B-E -15.3207 -12.2772 -62.7412 -90.3391 29 1 0 2691 0 8 9
B-F 0.0 0.0 -0.0327 -0.0327 5 0 0 17 0 0 2
B-H -67.3301 -13.611 -283.839 -364.7802 86 11 2 10508 0 13 8
B-I -52.4362 -23.9937 -382.931 -459.3609 144 22 10 14908 2 29 38
B-K 0.0 0.0 -36.4421 -36.4421 22 1 0 1434 0 5 3
B-T 0.0 0.0 -2.2758 -2.2758 17 0 0 320 0 0 1
C-F -24.5709 -28.1143 -239.458 -292.1431 80 4 7 9214 2 28 11
C-G -52.3124 -42.4086 -444.785 -539.506 154 25 9 17270 2 30 19
C-H 0.0 0.0 -56.903 -56.903 31 0 0 2249 0 4 3
C-J -33.3869 -2.381 -360.188 -395.9559 118 13 6 15126 3 17 24
C-L 0.0 0.0 -2.4517 -2.4517 6 0 0 134 0 0 1
C-N 0.0 0.0 -0.0359 -0.0359 5 0 0 21 0 0 1
C-S 0.0 0.0 -0.0019 -0.0019 2 0 0 1 0 4 4
C-T 0.0 0.0 -8.1506 -8.1506 16 0 0 633 0 0 2
D-E -96.566 -30.1472 -420.909 -547.6222 108 25 13 16045 3 46 46
D-F -10.5979 0.0 -34.5901 -45.188 18 1 0 1191 0 6 1
D-I -18.8325 -23.0173 -84.5645 -126.4142 48 1 3 3536 2 13 13
D-K -33.3567 -20.1103 -431.041 -484.508 112 16 8 16160 1 22 24
D-L 0.0 0.0 -0.0918 -0.0918 6 0 0 29 0 1 1
D-M 0.0 0.734 -55.8751 -55.141 51 4 4 2532 0 5 4
E-F -4.8361 -14.6967 -35.4202 -54.9529 23 3 0 1369 1 7 7
E-I -51.7264 -93.8641 -172.888 -318.4785 51 9 1 6088 7 20 13
F-G 0.0 0.0 -7.6076 -7.6076 5 0 0 342 0 0 0
F-J -7.4931 0.0 -30.6244 -38.1175 22 2 0 1055 0 3 3
F-N 0.0 0.0 -0.0043 -0.0043 2 0 0 4 0 0 0
F-P 0.0 0.0 -0.0019 -0.0019 2 0 0 1 0 3 4
F-S -3.0523 0.0 -16.2405 -19.2928 10 0 0 451 0 0 0
F-T 0.0 -17.3143 -5.4007 -22.715 6 0 0 250 0 4 0
G-H -5.6805 -7.9931 -52.0844 -65.758 17 1 0 1885 2 6 6
G-N 0.0 0.0 -171.845 -171.845 73 12 7 7168 0 2 1
G-O 0.0 0.0 -1.8747 -1.8747 16 0 0 303 0 0 1
G-P 0.0 0.0 -8.6329 -8.6329 17 0 0 667 0 0 2
G-S 0.0 -15.9835 -5.9201 -21.9037 6 0 0 261 0 4 1
H-U -8.1253 2.3653 -55.1554 -60.9154 47 7 2 3690 0 17 16
I-K -2.8733 0.0 -24.5395 -27.4128 12 0 0 722 0 2 3
J-L -9.1768 2.2844 -31.1299 -38.0223 16 0 0 1223 0 0 4
K-M 0.0 0.0 -0.2136 -0.2136 4 0 0 44 0 0 0
L-M -24.2887 -10.9741 -170.377 -205.6398 69 4 9 7015 1 4 12
N-O -82.4938 -68.9517 -853.204 -1004.6495 300 31 34 37375 5 37 42
N-P -77.7826 -88.6735 -738.196 -904.6521 245 26 20 29602 6 17 21
N-Q -16.2562 -33.4757 -321.223 -370.955 150 11 15 12898 4 19 22
N-R 0.0 0.0 -0.0631 -0.0631 10 0 0 24 0 2 1
N-S -72.2425 -16.5746 -356.895 -445.7121 104 20 11 13939 0 13 5
N-T -36.4526 2.1204 -85.2831 -119.6153 38 2 1 3425 0 11 3
N-U 0.0 0.0 -25.6461 -25.6461 21 1 0 976 0 3 0
N-V 0.0 0.0 -15.9348 -15.9348 16 0 0 582 0 0 4
N-W 0.0 0.0 -41.3837 -41.3837 37 3 3 2165 0 2 1
N-X -9.1546 1.121 -67.5961 -75.6298 47 2 0 2739 0 2 4
N-Y -34.1839 -0.5004 -470.043 -504.7273 141 20 12 17929 0 23 15
N-Z -80.2685 -19.4753 -316.413 -416.1568 96 26 5 11829 3 10 7
O-P 0.0 0.0 -1.1098 -1.1098 8 0 0 106 0 1 2
O-Q -31.8724 -4.6519 -205.037 -241.5613 84 20 3 8240 3 20 18
O-R -14.1508 -11.6378 -60.1006 -85.8892 31 0 0 2595 0 8 9
O-S 0.0 0.0 -0.0499 -0.0499 5 0 0 22 0 0 2
O-U -64.4487 -16.6497 -284.833 -365.9314 90 18 2 10788 1 13 8
O-V -44.4996 -28.3379 -378.328 -451.1654 143 10 11 14621 2 30 38
O-X 0.0 0.0 -37.4749 -37.4749 22 2 0 1499 0 5 3
P-S -20.7917 -26.4844 -242.294 -289.5701 82 7 7 9380 2 27 11
P-T -51.9678 -42.2012 -440.172 -534.341 152 23 9 17088 2 30 18
P-U 0.0 0.0 -58.7896 -58.7896 31 1 0 2320 0 4 3
P-W -24.8108 -1.1619 -345.147 -371.1197 118 10 7 14815 3 17 24
P-Y 0.0 0.0 -2.64 -2.64 7 0 0 133 0 0 1
Q-R -73.2198 -41.7973 -435.706 -550.7231 109 24 13 16016 6 45 44
Q-S -4.7935 0.0 -34.6146 -39.4081 18 1 0 1234 0 6 1
Q-V -15.6133 -23.1968 -94.6415 -133.4516 47 1 3 3681 2 13 14
Q-X -22.1518 -29.3702 -439.362 -490.884 111 18 8 16353 2 22 24
Q-Y 0.0 0.0 -0.1206 -0.1206 7 0 0 33 0 1 1
Q-Z 0.0 0.8473 -57.9931 -57.1458 49 2 4 2616 0 5 4
R-S -8.3536 -18.447 -42.0405 -68.8412 22 2 0 1448 1 7 8
R-V -90.4132 -97.6484 -162.95 -351.0116 54 16 1 6055 6 20 13
S-T 0.0 0.0 -6.5474 -6.5474 5 1 0 319 0 0 0
S-W -3.1479 0.0 -29.0852 -32.2331 21 2 0 1056 0 4 4
T-U -6.918 -7.9148 -55.7493 -70.5821 19 2 0 1965 1 6 6
V-X -3.028 0.0 -20.7298 -23.7578 11 3 0 763 0 2 3
W-Y -14.5483 2.6688 -29.7481 -41.6276 16 2 0 1235 0 0 4
X-Z 0.0 0.0 -0.1552 -0.1552 4 0 0 39 0 0 0
Y-Z -27.3178 -11.6441 -164.145 -203.1069 70 8 8 7041 1 4 12