2EIL
cadmium ion binding structure of bovine heart cytochrome c oxidase in the fully oxidized state
Total interactions analyzed 325
Total true interactions 93
Strongest Interaction Chains E-I
Int. Res. 53
Norm. En. per Res. -6.1487
Hub Node A(15)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -124.3492 -82.6215 -928.283 -1135.2537 302 32 36 38730 6 39 41
A-C -86.9796 -82.4442 -747.73 -917.1537 247 14 23 29569 6 17 21
A-D -12.5073 -19.1621 -314.719 -346.3884 153 8 14 12657 2 19 22
A-E 0.0 0.0 -0.1146 -0.1146 10 0 0 36 0 2 1
A-F -67.6025 -16.9836 -377.107 -461.6931 105 8 9 14081 0 13 6
A-G -30.2684 2.4097 -86.3435 -114.2022 40 2 0 3406 0 11 3
A-H 0.0 0.0 -22.128 -22.128 23 3 0 981 0 3 0
A-I 0.0 0.0 -19.6357 -19.6357 17 0 0 614 0 0 4
A-J 0.0 0.0 -44.1687 -44.1687 37 2 3 2192 0 2 1
A-K -11.1146 4.5389 -69.196 -75.7717 45 1 0 2786 0 2 4
A-L -43.0603 -8.99 -458.088 -510.1383 139 12 13 17329 0 18 15
A-M -85.1282 -28.3276 -307.846 -421.3018 96 13 5 11642 3 10 6
A-P 0.0 0.0 -0.028 -0.028 5 0 0 21 0 0 1
A-S 0.0 0.0 -0.0035 -0.0035 2 0 0 4 0 0 0
A-T 0.0 0.0 -155.122 -155.122 72 7 6 6936 0 2 1
B-C 0.0 0.0 -1.1462 -1.1462 7 0 0 103 0 1 2
B-D -29.5349 -3.8732 -206.615 -240.0231 81 7 3 8178 3 20 18
B-E -22.3588 -10.0852 -63.3622 -95.8061 30 1 0 2661 0 8 9
B-F 0.0 0.0 -0.0436 -0.0436 4 0 0 22 0 0 2
B-H -56.7581 -12.3836 -275.509 -344.6507 85 10 2 10432 0 13 8
B-I -67.0138 -22.0406 -403.32 -492.3744 142 14 10 15080 2 30 37
B-K 0.0 0.0 -35.0741 -35.0741 22 1 0 1449 0 5 3
B-T 0.0 0.0 -1.623 -1.623 17 0 0 280 0 0 1
C-F -29.6648 -29.3183 -256.456 -315.4391 81 7 7 9449 2 27 11
C-G -58.9048 -40.5308 -442.458 -541.8936 153 15 9 17073 2 30 18
C-H -3.4285 -7.3006 -56.4015 -67.1306 31 1 0 2287 0 4 3
C-J -30.0607 -3.4768 -370.848 -404.3855 119 8 6 15114 4 17 23
C-L 0.0 0.0 -1.9468 -1.9468 3 0 0 79 0 0 1
C-N 0.0 0.0 -0.0385 -0.0385 5 0 0 23 0 0 1
C-S 0.0 0.0 -0.0016 -0.0016 2 0 0 1 0 4 4
C-T 0.0 0.0 -8.3164 -8.3164 16 0 0 639 0 0 2
D-E -87.8654 -28.8041 -434.487 -551.1565 109 16 13 15845 4 46 46
D-F -12.0625 0.0 -30.1841 -42.2466 17 1 0 1114 0 6 1
D-I -21.646 -25.8885 -95.01 -142.5445 48 4 3 3735 2 13 13
D-K -31.5516 -31.985 -445.633 -509.1696 112 11 8 16426 1 23 24
D-L 0.0 0.0 -0.1151 -0.1151 6 0 0 30 0 1 1
D-M 0.0 0.6329 -60.5161 -59.8832 49 3 3 2648 0 5 4
E-F -4.1292 -16.0022 -40.649 -60.7804 23 0 0 1387 1 7 7
E-I -54.8951 -99.6913 -171.294 -325.8804 53 8 1 6131 7 21 13
F-G 0.0 0.0 -7.3366 -7.3366 5 0 0 346 0 0 0
F-J -3.6628 0.0 -33.3469 -37.0097 21 2 0 1061 0 3 3
F-N 0.0 0.0 -0.0045 -0.0045 3 0 0 6 0 0 0
F-S 0.0 0.0 -13.552 -13.552 10 0 0 415 0 0 0
F-T 0.0 -17.4809 -5.249 -22.7299 6 0 0 246 1 4 0
G-H -4.7722 -7.2655 -53.8925 -65.9302 18 0 0 1901 2 6 6
G-N -5.8071 0.0 -175.956 -181.7631 71 8 6 7138 0 2 1
G-O 0.0 0.0 -1.7464 -1.7464 19 0 0 285 0 0 1
G-P 0.0 0.0 -9.4209 -9.4209 17 0 0 685 0 0 2
G-S 0.0 -18.0397 -6.6514 -24.6911 6 0 0 267 0 4 1
H-U -10.7258 2.7439 -63.1493 -71.1312 46 5 2 3614 0 16 16
I-K -4.5147 0.0 -23.5783 -28.093 12 1 0 729 0 2 3
J-L -12.6157 2.6021 -29.705 -39.7185 15 2 0 1193 0 0 4
K-M 0.0 0.0 -0.3156 -0.3156 4 0 0 55 0 0 0
L-M -26.0993 -10.384 -171.57 -208.0533 68 6 10 7080 1 4 12
N-O -113.7526 -81.2997 -928.685 -1123.7374 303 27 35 38835 6 39 41
N-P -86.2213 -83.9386 -740.093 -910.2528 244 14 21 29375 6 17 21
N-Q -14.3245 -37.0807 -318.186 -369.5912 151 8 14 12687 4 19 22
N-R 0.0 0.0 -0.1012 -0.1012 10 0 0 27 0 2 1
N-S -72.4275 -15.214 -374.774 -462.4155 104 11 9 14153 0 13 5
N-T -27.5303 2.3295 -84.3905 -109.5913 39 1 0 3379 0 11 3
N-U 0.0 0.0 -24.7499 -24.7499 24 2 0 1013 0 3 0
N-V 0.0 0.0 -17.4327 -17.4327 17 0 0 590 0 0 4
N-W 0.0 0.0 -42.939 -42.939 37 2 3 2204 0 2 1
N-X -4.9162 2.3535 -61.3986 -63.9614 45 4 0 2698 0 2 4
N-Y -47.2658 -8.5883 -455.33 -511.1841 139 10 13 17367 1 19 14
N-Z -80.5573 -21.6017 -301.656 -403.8149 93 18 5 11629 3 10 6
O-P 0.0 0.0 -1.0351 -1.0351 8 0 0 100 0 1 2
O-Q -35.3134 -6.3787 -211.237 -252.9291 86 14 3 8301 4 20 18
O-R -15.0569 -10.4764 -61.9414 -87.4748 30 1 0 2652 0 8 9
O-S 0.0 0.0 -0.0439 -0.0439 4 0 0 19 0 0 2
O-U -57.3739 -14.7868 -279.617 -351.7777 88 15 2 10648 0 13 8
O-V -51.3338 -22.9594 -392.173 -466.4661 139 17 11 14879 2 29 38
O-X 0.0 0.0 -35.1907 -35.1907 22 1 0 1474 0 5 3
P-S -32.7617 -26.0025 -252.464 -311.2281 81 7 7 9477 2 27 10
P-T -56.9508 -40.1553 -443.745 -540.8511 154 17 9 17056 3 30 18
P-U 0.0 -7.6727 -57.7576 -65.4303 30 1 0 2312 0 4 3
P-W -31.0981 -4.2086 -367.827 -403.1338 116 6 6 15085 4 17 23
P-Y 0.0 0.0 -1.8398 -1.8398 4 0 0 80 0 0 1
Q-R -78.2964 -38.1497 -435.998 -552.4441 109 22 13 16008 6 45 44
Q-S -12.3077 0.0 -35.0056 -47.3133 20 1 0 1199 0 6 1
Q-V -18.0045 -23.8615 -98.5949 -140.4609 47 2 3 3763 2 13 13
Q-X -25.1042 -27.3722 -438.627 -491.1034 111 13 8 16453 1 23 23
Q-Y 0.0 0.0 -0.1433 -0.1433 6 0 0 33 0 1 1
Q-Z 0.0 0.8659 -60.3918 -59.5259 48 2 3 2718 0 5 4
R-S -6.869 -18.5334 -45.0307 -70.4331 22 0 0 1489 1 7 8
R-V -87.5325 -59.3685 -176.146 -323.0469 54 12 1 6082 6 20 13
S-T 0.0 0.0 -6.6951 -6.6951 5 1 0 341 0 0 0
S-W -4.8867 0.0 -32.4853 -37.372 21 2 0 1045 0 3 3
T-U -11.8754 -9.972 -59.1417 -80.9891 19 1 0 1985 1 6 6
V-X 0.0 0.0 -19.671 -19.671 11 2 0 748 0 2 3
W-Y -16.5948 3.5464 -29.7184 -42.7668 15 3 0 1234 0 0 4
X-Z 0.0 0.0 -0.2 -0.2 3 0 0 43 0 0 0
Y-Z -27.4508 -9.5662 -160.617 -197.6339 67 6 9 6845 1 4 12