2ED6

crystal structure of envelope protein vp28 from white spot syndrome virus (wssv)

• Total interactions analyzed: 66
• Total true interactions: 19
• Strongest Interaction:
  • Chains: D-I
  • Int. Res.: 13
  • Norm. En. per Res.: -2.7717
• Hub Node: G(5)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-31.5298	20.0873	-251.861	-263.3036	120	9	3	11103	1	20	20
A-C	-36.8621	19.286	-249.318	-266.8941	120	6	3	10973	1	18	20
A-D	0.0	10.8487	-9.8454	1.0033	20	0	0	839	0	18	14
B-C	-28.1525	16.3531	-257.519	-269.3184	120	7	4	10872	1	18	20
D-E	-54.1076	22.4318	-268.591	-300.2668	121	21	5	11611	1	19	20
D-F	-31.5497	40.7315	-232.081	-222.8992	120	14	3	10755	1	18	19
D-I	-11.9398	-13.4878	-10.6044	-36.0319	13	2	0	600	2	2	4
E-F	-51.2748	20.8941	-265.185	-295.5657	120	18	5	11431	1	18	20
E-I	0.0	-3.7165	-37.9368	-41.6533	50	7	2	2618	0	9	13
G-H	-43.0928	16.938	-255.787	-281.9418	121	14	3	11294	1	18	20
G-I	-17.9368	39.0665	-237.562	-216.4323	119	5	3	10391	1	19	20
G-J	0.0	0.0	-6.8147	-6.8147	21	0	0	585	0	0	1
G-K	0.0	0.0	-0.6223	-0.6223	7	0	0	128	0	0	0
G-L	0.0	0.0	-9.9948	-9.9948	13	0	0	661	0	0	0
H-I	-31.7761	16.512	-258.075	-273.3391	119	12	3	11056	1	19	20
I-L	0.0	0.0	-0.0031	-0.0031	4	0	0	5	0	0	0
J-K	-30.0002	4.5874	-255.062	-280.4749	120	13	6	11342	1	20	20
J-L	-39.4445	14.0461	-253.719	-279.1174	119	9	4	10860	1	19	20
K-L	-55.3842	3.2851	-261.235	-313.3341	120	11	3	10947	1	19	20

Interface residues

• A-B: ALA107B, ALA148A, ARG106B, ARG130B, ARG53A, ASN133B, ASN144A, ASN154A, ASN154B, ASN43A, ASN43B, ASN47A, ASN47B, ASN51A, ASN51B, ASP191A, ASP42A, ASP42B, ASP49A, ASP49B, ASP73A, ASP75A, CYS173B, GLN138A, GLN138B, GLU109B, GLU119B, GLU38A, GLU45A, GLU45B, GLU50A, GLU50B, GLY105B, GLY136B, GLY151A, GLY174B, GLY178A, GLY178B, GLY200B, GLY78A, HIS195A, HIS195B, HIS40A, HIS40B, ILE134B, ILE143A, ILE37A, ILE37B, ILE44A, ILE44B, ILE80A, LEU108B, LEU116B, LEU52A, LEU77A, LYS131B, LYS142A, LYS147A, LYS79A, MET137B, MET139A, MET139B, MET48A, MET48B, PHE118B, PHE149A, PHE158B, PHE171B, PHE177A, PHE177B, PHE190A, PHE65B, PHE72A, PRO141A, PRO145A, PRO160B, SER146A, SER152A, SER152B, SER153A, SER153B, SER156B, SER157B, SER199B, SER71A, SER74A, THR117B, THR121B, THR135B, THR155A, THR155B, THR159B, THR175B, THR176B, THR197A, THR197B, THR201B, THR32B, THR34A, THR34B, THR36A, THR36B, THR39A, THR39B, THR41A, THR41B, THR46A, THR46B, THR76A, TYR193A, TYR198A, TYR198B, VAL110B, VAL140A, VAL150A, VAL161B, VAL172B, VAL196B, VAL33A, VAL33B
• A-C: ALA107A, ALA148C, ARG106A, ARG130A, ARG53C, ASN133A, ASN144C, ASN154A, ASN154C, ASN43A, ASN43C, ASN47A, ASN47C, ASN51A, ASN51C, ASP191C, ASP42A, ASP42C, ASP49A, ASP49C, ASP73C, ASP75C, CYS173A, GLN138A, GLN138C, GLU109A, GLU119A, GLU38C, GLU45A, GLU45C, GLU50A, GLU50C, GLY105A, GLY136A, GLY151C, GLY174A, GLY178A, GLY178C, GLY200A, GLY78C, HIS195A, HIS195C, HIS40A, HIS40C, ILE134A, ILE143C, ILE37A, ILE37C, ILE44A, ILE44C, ILE80C, LEU108A, LEU116A, LEU52C, LEU77C, LYS131A, LYS142C, LYS147C, LYS79C, MET137A, MET139A, MET139C, MET48A, MET48C, PHE118A, PHE149C, PHE158A, PHE171A, PHE177A, PHE177C, PHE190C, PHE65A, PHE72C, PRO141C, PRO145C, PRO160A, SER146C, SER152A, SER152C, SER153A, SER153C, SER156A, SER157A, SER199A, SER71C, SER74C, THR117A, THR121A, THR135A, THR155A, THR155C, THR159A, THR175A, THR176A, THR197A, THR197C, THR201A, THR32A, THR34A, THR34C, THR36A, THR36C, THR39A, THR39C, THR41A, THR41C, THR46A, THR46C, THR76C, TYR193C, TYR198A, TYR198C, VAL110A, VAL140C, VAL150C, VAL161A, VAL172A, VAL196A, VAL33A, VAL33C
• A-D: ALA89A, ARG83D, ASN84D, ASP166A, ASP69D, ASP88A, ASP95D, GLN90A, GLN90D, GLU93A, GLU93D, GLU94D, GLY85D, LYS79D, LYS81D, LYS86D, LYS92A, SER71D, SER87A, VAL168A
• B-C: ALA107C, ALA148B, ARG106C, ARG130C, ARG53B, ASN133C, ASN144B, ASN154B, ASN154C, ASN43B, ASN43C, ASN47B, ASN47C, ASN51B, ASN51C, ASP191B, ASP42B, ASP42C, ASP49B, ASP49C, ASP73B, ASP75B, CYS173C, GLN138B, GLN138C, GLU109C, GLU119C, GLU38B, GLU45B, GLU45C, GLU50B, GLU50C, GLY105C, GLY136C, GLY151B, GLY174C, GLY178B, GLY178C, GLY200C, GLY78B, HIS195B, HIS195C, HIS40B, HIS40C, ILE134C, ILE143B, ILE37B, ILE37C, ILE44B, ILE44C, ILE80B, LEU108C, LEU116C, LEU52B, LEU77B, LYS131C, LYS142B, LYS147B, LYS79B, MET137C, MET139B, MET139C, MET48B, MET48C, PHE118C, PHE149B, PHE158C, PHE171C, PHE177B, PHE177C, PHE190B, PHE65C, PHE72B, PRO141B, PRO145B, PRO160C, SER146B, SER152B, SER152C, SER153B, SER153C, SER156C, SER157C, SER199C, SER71B, SER74B, THR117C, THR121C, THR135C, THR155B, THR155C, THR159C, THR175C, THR176C, THR197B, THR197C, THR201C, THR32C, THR34B, THR34C, THR36B, THR36C, THR39B, THR39C, THR41B, THR41C, THR46B, THR46C, THR76B, TYR193B, TYR198B, TYR198C, VAL110C, VAL140B, VAL150B, VAL161C, VAL172C, VAL196C, VAL33B, VAL33C
• D-E: ALA107E, ALA148D, ARG106E, ARG130E, ARG53D, ASN133E, ASN144D, ASN154D, ASN154E, ASN43D, ASN43E, ASN47D, ASN47E, ASN51D, ASN51E, ASP191D, ASP42D, ASP42E, ASP49D, ASP49E, ASP73D, ASP75D, CYS173E, GLN138D, GLN138E, GLU109E, GLU119E, GLU38D, GLU45D, GLU45E, GLU50D, GLU50E, GLY105E, GLY136E, GLY151D, GLY174E, GLY178D, GLY178E, GLY200E, GLY78D, HIS195D, HIS195E, HIS40D, HIS40E, ILE134E, ILE143D, ILE37D, ILE37E, ILE44D, ILE44E, ILE80D, LEU108E, LEU116E, LEU52D, LEU77D, LYS131E, LYS142D, LYS147D, LYS35E, LYS79D, MET137E, MET139D, MET139E, MET48D, MET48E, PHE118E, PHE149D, PHE158E, PHE171E, PHE177D, PHE177E, PHE190D, PHE65E, PHE72D, PRO141D, PRO145D, PRO160E, SER146D, SER152D, SER152E, SER153D, SER153E, SER156E, SER157E, SER199E, SER71D, SER74D, THR117E, THR121E, THR135E, THR155D, THR155E, THR159E, THR175E, THR176E, THR197D, THR197E, THR201E, THR32E, THR34D, THR34E, THR36D, THR36E, THR39D, THR39E, THR41D, THR41E, THR46D, THR46E, THR76D, TYR193D, TYR198D, TYR198E, VAL110E, VAL140D, VAL150D, VAL161E, VAL172E, VAL196E, VAL33D, VAL33E
• D-F: ALA107D, ALA148F, ARG106D, ARG130D, ARG53F, ASN133D, ASN144F, ASN154D, ASN154F, ASN43D, ASN43F, ASN47D, ASN47F, ASN51D, ASN51F, ASP191F, ASP42D, ASP42F, ASP49D, ASP49F, ASP73F, ASP75F, CYS173D, GLN138D, GLN138F, GLU109D, GLU119D, GLU38F, GLU45D, GLU45F, GLU50D, GLU50F, GLY105D, GLY136D, GLY151F, GLY174D, GLY178D, GLY178F, GLY200D, GLY78F, HIS195D, HIS195F, HIS40D, HIS40F, ILE134D, ILE143F, ILE37D, ILE37F, ILE44D, ILE44F, ILE80F, LEU108D, LEU116D, LEU52F, LEU77F, LYS131D, LYS142F, LYS147F, LYS79F, MET137D, MET139D, MET139F, MET48D, MET48F, PHE118D, PHE149F, PHE158D, PHE171D, PHE177D, PHE177F, PHE190F, PHE65D, PHE72F, PRO141F, PRO145F, PRO160D, SER146F, SER152D, SER152F, SER153D, SER153F, SER156D, SER157D, SER199D, SER71F, SER74F, THR117D, THR121D, THR135D, THR155D, THR155F, THR159D, THR175D, THR176D, THR197D, THR197F, THR201D, THR32D, THR34D, THR34F, THR36D, THR36F, THR39D, THR39F, THR41D, THR41F, THR46D, THR46F, THR76F, TYR193F, TYR198D, TYR198F, VAL110D, VAL140F, VAL150F, VAL161D, VAL172D, VAL196D, VAL33D, VAL33F
• D-I: ARG83I, ASN144D, ASN84I, ASP69I, GLN90I, GLY85I, ILE82I, LYS147D, LYS86I, PRO145D, SER146D, THR68I, VAL70I
• E-F: ALA107F, ALA148E, ARG106F, ARG130F, ARG53E, ASN133F, ASN144E, ASN154E, ASN154F, ASN43E, ASN43F, ASN47E, ASN47F, ASN51E, ASN51F, ASP191E, ASP42E, ASP42F, ASP49E, ASP49F, ASP73E, ASP75E, CYS173F, GLN138E, GLN138F, GLU109F, GLU119F, GLU38E, GLU45E, GLU45F, GLU50E, GLU50F, GLY105F, GLY136F, GLY151E, GLY174F, GLY178E, GLY178F, GLY200F, GLY78E, HIS195E, HIS195F, HIS40E, HIS40F, ILE134F, ILE143E, ILE37E, ILE37F, ILE44E, ILE44F, ILE80E, LEU108F, LEU116F, LEU52E, LEU77E, LYS131F, LYS142E, LYS147E, LYS79E, MET137F, MET139E, MET139F, MET48E, MET48F, PHE118F, PHE149E, PHE158F, PHE171F, PHE177E, PHE177F, PHE190E, PHE65F, PHE72E, PRO141E, PRO145E, PRO160F, SER146E, SER152E, SER152F, SER153E, SER153F, SER156F, SER157F, SER199F, SER71E, SER74E, THR117F, THR121F, THR135F, THR155E, THR155F, THR159F, THR175F, THR176F, THR197E, THR197F, THR201F, THR32F, THR34E, THR34F, THR36E, THR36F, THR39E, THR39F, THR41E, THR41F, THR46E, THR46F, THR76E, TYR193E, TYR198E, TYR198F, VAL110F, VAL140E, VAL150E, VAL161F, VAL172F, VAL196F, VAL33E, VAL33F
• E-I: ALA107E, ALA148I, ALA182I, ALA183I, ALA185I, ALA89E, ARG106E, ARG83I, ASN144I, ASN188I, ASN84E, ASN84I, ASP69I, ASP88E, GLN90E, GLU104E, GLU109E, GLU119E, GLU93E, GLU94I, GLY105E, GLY113E, GLY186I, GLY187I, GLY85E, ILE82I, LEU108E, LEU189I, LYS123E, LYS142I, LYS79I, LYS81I, LYS86E, LYS86I, MET67I, MET91E, PHE72I, PRO145I, SER146I, SER71I, SER87E, THR111E, THR184I, THR57I, THR68I, TYR64E, VAL103E, VAL110E, VAL112E, VAL70I
• G-H: ALA107G, ALA148H, ARG106G, ARG130G, ARG53H, ASN133G, ASN144H, ASN154G, ASN154H, ASN43G, ASN43H, ASN47G, ASN47H, ASN51G, ASN51H, ASP191H, ASP42G, ASP42H, ASP49G, ASP49H, ASP73H, ASP75H, CYS173G, GLN138G, GLN138H, GLU109G, GLU119G, GLU38H, GLU45G, GLU45H, GLU50G, GLU50H, GLY105G, GLY136G, GLY151H, GLY174G, GLY178G, GLY178H, GLY200G, GLY78H, HIS195G, HIS195H, HIS40G, HIS40H, ILE134G, ILE143H, ILE37G, ILE37H, ILE44G, ILE44H, ILE80H, LEU108G, LEU116G, LEU52H, LEU77H, LYS131G, LYS142H, LYS147H, LYS79H, MET137G, MET139G, MET139H, MET48G, MET48H, PHE118G, PHE149H, PHE158G, PHE171G, PHE177G, PHE177H, PHE190H, PHE65G, PHE72H, PRO141H, PRO145H, PRO160G, SER146H, SER152G, SER152H, SER153G, SER153H, SER156G, SER157G, SER199G, SER71H, SER74H, THR117G, THR121G, THR135G, THR155G, THR155H, THR159G, THR175G, THR176G, THR197G, THR197H, THR201G, THR32G, THR34G, THR34H, THR36G, THR36H, THR39G, THR39H, THR41G, THR41H, THR46G, THR46H, THR76H, TYR193H, TYR198G, TYR198H, VAL110G, VAL140H, VAL150H, VAL161G, VAL172G, VAL196G, VAL33G, VAL33H, VAL70H
• G-I: ALA107I, ALA148G, ARG106I, ARG130I, ARG53G, ASN133I, ASN144G, ASN154G, ASN154I, ASN43G, ASN43I, ASN47G, ASN47I, ASN51G, ASN51I, ASP191G, ASP42G, ASP42I, ASP49G, ASP49I, ASP73G, ASP75G, CYS173I, GLN138G, GLN138I, GLU109I, GLU119I, GLU38G, GLU45G, GLU45I, GLU50G, GLU50I, GLY105I, GLY136I, GLY151G, GLY174I, GLY178G, GLY178I, GLY200I, GLY78G, HIS195G, HIS195I, HIS40G, HIS40I, ILE134I, ILE143G, ILE37G, ILE37I, ILE44G, ILE44I, ILE80G, LEU108I, LEU116I, LEU52G, LEU77G, LYS131I, LYS142G, LYS147G, LYS79G, MET137I, MET139G, MET139I, MET48G, MET48I, PHE118I, PHE149G, PHE158I, PHE171I, PHE177G, PHE177I, PHE190G, PHE65I, PHE72G, PRO141G, PRO160I, SER146G, SER152G, SER152I, SER153G, SER153I, SER156I, SER157I, SER199I, SER71G, SER74G, THR117I, THR121I, THR135I, THR155G, THR155I, THR159I, THR175I, THR176I, THR197G, THR197I, THR201I, THR32I, THR34G, THR34I, THR36G, THR36I, THR39G, THR39I, THR41G, THR41I, THR46G, THR46I, THR76G, TYR193G, TYR198G, TYR198I, VAL110I, VAL140G, VAL150G, VAL161I, VAL172I, VAL196I, VAL33G, VAL33I
• G-J: ALA179J, ALA183G, ARG83G, ASN115J, ASP69G, GLN114J, GLY113J, GLY178J, GLY61J, LEU116J, LEU189G, LYS142G, PRO180J, PRO55G, SER71G, THR111J, THR57G, THR68G, VAL112J, VAL60J, VAL70G
• G-K: ALA179K, ALA185G, GLN114K, GLY178K, LEU116K, PRO180K, THR184G
• G-L: ALA179L, ASN144G, GLN114L, GLY113L, GLY178L, LEU116L, LYS147G, PHE177L, PRO145G, PRO180L, SER146G, SER152L, SER153L
• H-I: ALA107H, ALA148I, ARG106H, ARG130H, ARG53I, ASN133H, ASN144I, ASN154H, ASN154I, ASN43H, ASN43I, ASN47H, ASN47I, ASN51H, ASN51I, ASP191I, ASP42H, ASP42I, ASP49H, ASP49I, ASP73I, ASP75I, CYS173H, GLN138H, GLN138I, GLU109H, GLU119H, GLU38I, GLU45H, GLU45I, GLU50H, GLU50I, GLY105H, GLY136H, GLY151I, GLY174H, GLY178H, GLY178I, GLY200H, GLY78I, HIS195H, HIS195I, HIS40H, HIS40I, ILE134H, ILE143I, ILE37H, ILE37I, ILE44H, ILE44I, ILE80I, LEU108H, LEU116H, LEU52I, LEU77I, LYS131H, LYS142I, LYS147I, LYS79I, MET137H, MET139H, MET139I, MET48H, MET48I, PHE118H, PHE149I, PHE158H, PHE171H, PHE177H, PHE177I, PHE190I, PHE65H, PHE72I, PRO141I, PRO145I, PRO160H, SER146I, SER152H, SER152I, SER153H, SER153I, SER156H, SER157H, SER199H, SER71I, SER74I, THR117H, THR121H, THR135H, THR155H, THR155I, THR159H, THR175H, THR176H, THR197H, THR201H, THR32H, THR34H, THR34I, THR36H, THR36I, THR39H, THR39I, THR41H, THR41I, THR46H, THR46I, THR76I, TYR193I, TYR198H, TYR198I, VAL110H, VAL140I, VAL150I, VAL161H, VAL172H, VAL196H, VAL33H, VAL33I
• I-L: ALA107I, GLN114L, GLU109I, PRO180L
• J-K: ALA107K, ALA148J, ARG106K, ARG130K, ARG53J, ASN133K, ASN144J, ASN154J, ASN154K, ASN43J, ASN43K, ASN47J, ASN47K, ASN51J, ASN51K, ASP191J, ASP42J, ASP42K, ASP49J, ASP49K, ASP73J, ASP75J, CYS173K, GLN138J, GLN138K, GLU109K, GLU119K, GLU38J, GLU38K, GLU45J, GLU45K, GLU50J, GLU50K, GLY105K, GLY136K, GLY151J, GLY174K, GLY178J, GLY178K, GLY200K, GLY78J, HIS195J, HIS195K, HIS40J, HIS40K, ILE134K, ILE143J, ILE37J, ILE37K, ILE44J, ILE44K, ILE80J, LEU108K, LEU116K, LEU52J, LEU77J, LYS131K, LYS142J, LYS147J, LYS35K, LYS79J, MET137K, MET139J, MET139K, MET48J, MET48K, PHE118K, PHE149J, PHE158K, PHE171K, PHE177J, PHE177K, PHE190J, PHE65K, PHE72J, PRO141J, PRO145J, PRO160K, SER146J, SER152J, SER152K, SER153J, SER153K, SER156K, SER157K, SER199K, SER74J, THR117K, THR121K, THR135K, THR155J, THR155K, THR159K, THR175K, THR176K, THR197K, THR201K, THR32K, THR34J, THR34K, THR36J, THR36K, THR39J, THR39K, THR41J, THR41K, THR46J, THR46K, THR76J, TYR193J, TYR198J, TYR198K, VAL110K, VAL140J, VAL150J, VAL161K, VAL172K, VAL196K, VAL33J, VAL33K
• J-L: ALA107J, ALA148L, ARG106J, ARG130J, ARG53L, ASN133J, ASN144L, ASN154J, ASN154L, ASN43J, ASN43L, ASN47J, ASN47L, ASN51J, ASN51L, ASP191L, ASP42J, ASP42L, ASP49J, ASP49L, ASP73L, ASP75L, CYS173J, GLN138J, GLN138L, GLU109J, GLU119J, GLU38L, GLU45J, GLU45L, GLU50J, GLU50L, GLY105J, GLY136J, GLY151L, GLY174J, GLY178J, GLY178L, GLY200J, GLY78L, HIS195J, HIS195L, HIS40J, HIS40L, ILE134J, ILE143L, ILE37J, ILE37L, ILE44J, ILE44L, ILE80L, LEU108J, LEU116J, LEU52L, LEU77L, LYS131J, LYS142L, LYS147L, LYS79L, MET137J, MET139J, MET139L, MET48J, MET48L, PHE118J, PHE149L, PHE158J, PHE171J, PHE177J, PHE177L, PHE190L, PHE65J, PHE72L, PRO141L, PRO145L, PRO160J, SER146L, SER152J, SER152L, SER153J, SER153L, SER156J, SER157J, SER199J, SER71L, SER74L, THR117J, THR121J, THR135J, THR155J, THR155L, THR159J, THR175J, THR176J, THR197J, THR197L, THR201J, THR32J, THR34J, THR34L, THR36J, THR36L, THR39J, THR39L, THR41J, THR41L, THR46J, THR46L, THR76L, TYR193L, TYR198J, TYR198L, VAL110J, VAL140L, VAL150L, VAL161J, VAL172J, VAL33J, VAL33L
• K-L: ALA107L, ALA148K, ARG106L, ARG130L, ARG53K, ASN133L, ASN144K, ASN154K, ASN154L, ASN43K, ASN43L, ASN47K, ASN47L, ASN51K, ASN51L, ASP191K, ASP42K, ASP42L, ASP49K, ASP49L, ASP73K, ASP75K, CYS173L, GLN138K, GLN138L, GLU109L, GLU119L, GLU38K, GLU45K, GLU45L, GLU50K, GLU50L, GLY105L, GLY136L, GLY151K, GLY174L, GLY178K, GLY178L, GLY200L, GLY78K, HIS195K, HIS195L, HIS40K, HIS40L, ILE134L, ILE143K, ILE37K, ILE37L, ILE44K, ILE44L, ILE80K, LEU108L, LEU116L, LEU52K, LEU77K, LYS131L, LYS142K, LYS147K, LYS35K, LYS79K, MET137L, MET139K, MET139L, MET48K, MET48L, PHE118L, PHE149K, PHE158L, PHE171L, PHE177K, PHE177L, PHE190K, PHE65L, PHE72K, PRO141K, PRO145K, PRO160L, SER146K, SER152K, SER152L, SER153K, SER153L, SER156L, SER157L, SER199L, SER71K, SER74K, THR117L, THR121L, THR135L, THR155K, THR155L, THR159L, THR175L, THR176L, THR197K, THR197L, THR201L, THR32L, THR34K, THR34L, THR36K, THR36L, THR39K, THR39L, THR41K, THR41L, THR46K, THR46L, THR76K, TYR193K, TYR198L, VAL110L, VAL140K, VAL150K, VAL161L, VAL172L, VAL196L, VAL33K, VAL33L