2E2J
rna polymerase ii elongation complex in 5 mm mg+2 with gmpcpp
Total interactions analyzed 78
Total true interactions 22
Strongest Interaction Chains A-B
Int. Res. 765
Norm. En. per Res. -4.1287
Hub Node A(7)
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Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -387.1607 -255.3224 -2515.95 -3158.4331 765 179 58 106378 24 258 234
A-C -5.2449 13.7479 -76.8852 -68.3822 57 2 0 3194 0 18 17
A-E -73.5306 -88.2551 -535.104 -696.8897 208 36 14 23327 8 78 62
A-F -44.8694 -64.5749 -397.588 -507.0323 154 23 15 18265 1 48 44
A-H -49.4612 0.6506 -349.912 -398.7227 142 31 10 17078 1 34 33
A-I -81.2836 -47.9546 -401.567 -530.8052 140 18 9 16510 2 54 51
A-K -34.5378 -29.5376 -239.234 -303.3094 89 8 7 9574 2 22 20
B-C -67.5176 -81.8261 -492.678 -642.0217 159 25 4 17730 7 56 62
B-F 0.0 0.0 -8.6602 -8.6602 21 2 0 461 0 5 7
B-H 0.0 0.0 -0.6675 -0.6675 3 0 0 49 0 0 0
B-I 0.0 -55.527 -280.88 -336.407 134 18 2 13093 3 50 50
B-J -25.7275 -11.418 -422.242 -459.3876 138 21 7 18377 2 36 36
B-K -9.5956 -3.8215 -59.0548 -72.472 53 9 0 3241 1 17 20
B-L -57.2915 -57.2613 -218.265 -332.8178 106 11 7 10226 6 43 43
C-H 0.0 -3.5251 -23.4882 -27.0133 25 0 1 1272 0 8 6
C-J -55.6849 -43.2033 -200.192 -299.0802 110 25 10 11743 5 40 28
C-K -31.1801 -17.1316 -476.846 -525.1577 152 20 15 22269 5 46 43
C-L -36.6383 -28.3046 -133.741 -198.684 59 9 9 5390 3 22 15
E-F 0.0 -17.0082 -16.7664 -33.7746 19 1 0 991 0 5 5
H-K -12.1625 0.0 -26.4963 -38.6588 25 2 0 1529 1 6 5
J-L 0.0 0.0 -6.0663 -6.0663 9 0 0 329 0 0 1
K-L 0.0 4.5988 -0.9472 3.6516 5 0 0 168 0 3 2