2DZN

crystal structure analysis of yeast nas6p complexed with the proteasome subunit, rpt3

• Total interactions analyzed: 15
• Total true interactions: 9
• Strongest Interaction:
  • Chains: C-D
  • Int. Res.: 114
  • Norm. En. per Res.: -3.8521
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-67.9374	-100.825	-205.452	-374.2144	100	17	0	9309	7	53	40
A-C	-10.7234	-7.0674	-37.2884	-55.0792	33	1	0	1650	1	9	10
A-D	0.0	-0.8436	-33.9221	-34.7657	25	4	0	1388	0	2	2
B-C	0.0	0.0	-25.7893	-25.7893	15	1	0	1014	0	2	1
B-D	0.0	-3.272	-69.7915	-73.0635	46	4	10	4103	0	3	1
B-F	0.0	0.0	-0.2257	-0.2257	3	0	0	39	0	0	0
C-D	-50.7232	-109.5215	-278.894	-439.1387	114	9	0	11383	12	65	55
D-F	0.0	0.0	-0.0169	-0.0169	5	0	0	15	0	0	0
E-F	-27.403	-122.6358	-263.63	-413.6688	114	29	0	11458	6	60	52

Interface residues

• A-B: ALA147A, ALA148A, ALA183A, ALA363B, ALA366B, ALA394B, ALA412B, ALA79A, ARG146A, ARG374B, ARG37A, ARG393B, ARG396B, ARG399B, ASN105A, ASN140A, ASN375B, ASN398B, ASN3A, ASP137A, ASP171A, ASP33A, ASP35A, ASP367B, ASP369B, ASP376B, ASP406B, ASP69A, ASP70A, CYS80A, GLN106A, GLN141A, GLN173A, GLN34A, GLN404B, GLN47A, GLN8A, GLU12A, GLU184A, GLU365B, GLU408B, GLU409B, GLY116A, GLY174A, GLY36A, GLY72A, GLY83A, HIS112A, HIS145A, HIS180A, HIS186A, HIS41A, HIS77A, ILE142A, ILE372B, ILE373B, ILE402B, ILE78A, LEU113A, LEU362B, LEU368B, LEU371B, LEU403B, LEU407B, LYS117A, LYS138A, LYS172A, LYS207A, LYS397B, LYS416B, MET11A, PHE139A, PHE179A, PHE46A, PRO177A, PRO364B, PRO75A, SER149A, SER370B, SER377B, SER405B, SER45A, SER71A, SER81A, THR104A, THR74A, TRP119A, TRP175A, TRP42A, TRP73A, TYR400B, TYR411B, TYR4A, VAL108A, VAL150A, VAL214A, VAL401B, VAL415B, VAL44A, VAL82A
• A-C: ALA48A, ALA9A, ASN13A, ASN13C, ASN217A, ASN217C, ASN226A, ASN226C, CYS10A, CYS10C, GLN219A, GLN219C, GLN8A, GLN8C, GLU12A, GLU12C, GLU14A, GLU14C, GLU218A, GLU218C, LEU216A, LYS17A, LYS222A, LYS222C, MET11A, MET11C, PHE223A, PHE223C, PHE46A, PHE46C, TRP42A, VAL220A, VAL220C
• A-D: ALA183A, ALA215A, ALA357D, ALA363D, ARG399D, ASN217A, GLN219A, GLU184A, GLU218A, GLY185A, HIS186A, LEU216A, LEU362D, LYS222A, LYS359D, MET360D, PRO364D, SER149A, SER358D, SER361D, TRP175A, TYR400D, VAL150A, VAL220A, VAL401D
• B-C: ALA183C, ASN217C, GLN219C, GLU184C, GLU218C, GLY185C, LEU216C, LEU362B, LYS222C, MET360B, PRO364B, SER361B, TYR400B, VAL220C, VAL401B
• B-D: ALA357D, ALA366B, ALA381B, ALA381D, ALA384B, ALA384D, ALA385B, ALA385D, ARG349D, ASN375B, ASP369B, ASP376B, GLN388B, GLN388D, GLY354D, GLY380B, GLY380D, ILE352D, ILE356D, ILE372B, ILE373B, ILE383B, ILE383D, ILE386B, ILE402B, LEU351D, LEU362B, LEU368B, LEU371B, LEU378B, LEU407B, LYS359D, MET360B, MET360D, MET387B, MET387D, PHE353D, SER358D, SER361B, SER370B, SER377B, SER379B, SER379D, THR355D, VAL382B, VAL382D
• B-F: GLN388B, GLN388F, LEU392F
• C-D: ALA147C, ALA148C, ALA181C, ALA183C, ALA215C, ALA363D, ALA366D, ALA394D, ALA412D, ALA79C, ARG146C, ARG349D, ARG350D, ARG374D, ARG37C, ARG393D, ARG396D, ARG399D, ASN105C, ASN217C, ASN375D, ASN398D, ASN3C, ASP137C, ASP171C, ASP205C, ASP33C, ASP35C, ASP367D, ASP369D, ASP376D, ASP406D, ASP69C, ASP70C, CYS80C, GLN106C, GLN141C, GLN173C, GLN34C, GLN404D, GLN47C, GLN8C, GLU12C, GLU184C, GLU348D, GLU365D, GLU408D, GLU409D, GLY116C, GLY151C, GLY174C, GLY185C, GLY36C, GLY72C, GLY83C, HIS112C, HIS145C, HIS180C, HIS186C, HIS41C, HIS77C, HIS7C, ILE142C, ILE372D, ILE373D, ILE402D, ILE78C, LEU113C, LEU144C, LEU182C, LEU216C, LEU351D, LEU362D, LEU368D, LEU371D, LEU403D, LEU407D, LYS117C, LYS118C, LYS138C, LYS172C, LYS207C, LYS397D, MET11C, PHE139C, PHE179C, PHE46C, PRO143C, PRO177C, PRO364D, SER149C, SER2C, SER361D, SER370D, SER377D, SER405D, SER45C, SER71C, SER81C, THR104C, TRP119C, TRP175C, TRP42C, TRP73C, TYR400D, TYR411D, TYR4C, VAL108C, VAL115C, VAL150C, VAL214C, VAL401D, VAL44C, VAL82C
• D-F: ALA381D, GLN388F, LEU392F, SER379D, VAL395F
• E-F: ALA147E, ALA148E, ALA181E, ALA183E, ALA363F, ALA366F, ALA394F, ALA79E, ARG146E, ARG349F, ARG350F, ARG374F, ARG37E, ARG393F, ARG396F, ARG399F, ASN105E, ASN13E, ASN375F, ASN398F, ASN3E, ASP137E, ASP171E, ASP33E, ASP35E, ASP367F, ASP369F, ASP376F, ASP406F, ASP69E, ASP70E, CYS10E, CYS80E, GLN106E, GLN141E, GLN173E, GLN34E, GLN404F, GLN47E, GLN8E, GLU12E, GLU184E, GLU348F, GLU365F, GLU408F, GLU409F, GLY116E, GLY151E, GLY185E, GLY36E, GLY72E, GLY83E, HIS112E, HIS145E, HIS180E, HIS186E, HIS41E, HIS77E, ILE142E, ILE372F, ILE373F, ILE402F, ILE78E, LEU113E, LEU144E, LEU182E, LEU216E, LEU351F, LEU362F, LEU368F, LEU371F, LEU378F, LEU403F, LEU407F, LYS117E, LYS118E, LYS138E, LYS172E, LYS207E, LYS397F, MET11E, PHE139E, PHE46E, PRO143E, PRO177E, PRO364F, PRO75E, SER149E, SER152E, SER2E, SER361F, SER370F, SER377F, SER405F, SER45E, SER71E, SER81E, THR104E, THR74E, TRP119E, TRP175E, TRP42E, TRP73E, TYR400F, TYR411F, TYR4E, VAL108E, VAL115E, VAL150E, VAL214E, VAL395F, VAL401F, VAL44E, VAL82E