2DW7
crystal structure of d-tartrate dehydratase from bradyrhizobium japonicum complexed with mg++ and meso- tartrate
Total interactions analyzed 120
Total true interactions 35
Strongest Interaction Chains O-P
Int. Res. 171
Norm. En. per Res. -4.7094
Hub Node A(6)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -72.5712 -196.757 -553.771 -823.0992 175 37 1 20967 11 84 66
A-C 0.0 11.6394 -37.6514 -26.012 54 3 0 2309 1 24 27
A-D 0.0 0.0 -11.6526 -11.6526 32 2 0 987 0 16 17
A-J -2.5942 -2.8426 -53.3762 -58.8131 62 11 0 3213 2 34 30
A-K -6.2454 9.5724 -116.324 -112.997 61 3 0 4612 0 28 30
A-L -16.6129 20.1781 -31.2072 -27.642 34 2 3 1594 4 2 8
B-C -16.1595 4.7336 -22.1736 -33.5995 25 1 0 1168 4 13 15
B-D 0.0 0.0 -14.3263 -14.3263 31 1 0 902 0 6 6
B-K -24.2152 20.1526 -38.5144 -42.5769 34 6 4 1990 4 4 8
B-L -2.1582 -2.2764 -99.0207 -103.4553 60 4 0 4244 0 28 29
B-O 0.0 -9.9851 -9.3479 -19.333 27 6 0 1071 5 31 27
C-D -88.8439 -210.358 -500.921 -800.1229 172 44 1 20805 12 84 66
C-F 0.0 -18.9071 -86.1712 -105.0783 61 6 0 3939 2 25 20
C-M -2.5065 2.5824 -95.1569 -95.081 59 2 0 4031 0 28 29
C-N -17.9778 20.0614 -36.3509 -34.2673 34 3 5 1795 4 4 8
D-G 0.0 -30.7317 -22.5782 -53.3099 36 0 0 1412 1 23 24
D-M -23.595 20.8035 -38.0143 -40.8058 34 2 4 1809 3 4 8
D-N -5.6821 3.9589 -95.8586 -97.5819 59 1 0 4008 0 28 30
D-O -5.5906 -3.4046 -36.0959 -45.0911 24 5 0 1474 3 19 18
D-P -3.8635 0.0 -22.6812 -26.5447 26 1 0 1317 0 8 10
E-F -72.7437 -198.3348 -518.017 -789.0954 174 26 1 20397 12 86 65
F-G 0.0 -2.6603 -94.4073 -97.0676 51 15 1 4034 4 35 31
G-H -90.9238 -200.396 -512.714 -804.0338 172 39 1 20630 13 84 67
G-I 0.0 -9.0512 -15.5846 -24.6358 35 0 0 1348 0 24 20
G-J 0.0 -15.9248 -22.8507 -38.7755 47 0 0 1706 2 24 26
H-I 0.0 0.0 -12.1851 -12.1851 23 1 0 806 0 4 3
H-J -2.9953 -3.5302 -14.2099 -20.7355 21 0 0 958 2 15 17
I-J -89.0954 -170.8464 -527.92 -787.8618 174 39 1 20578 12 84 66
I-K 0.0 -3.8685 -5.0019 -8.8704 14 0 0 433 0 7 5
J-K 0.0 -20.6802 -7.0558 -27.736 19 0 0 628 0 13 8
K-L -83.285 -199.0117 -525.089 -807.3856 172 41 1 20545 15 84 66
M-N -79.5538 -116.3375 -509.829 -705.7203 175 42 1 20733 13 83 65
M-P 0.0 0.0 -0.0245 -0.0245 4 0 0 10 0 3 2
N-P 0.0 8.0312 -1.2253 6.8059 7 0 0 115 0 8 7
O-P -99.5282 -185.7541 -520.029 -805.3112 171 35 1 20533 12 83 65