2DVY

crystal structure of restriction endonucleases pabi

• Total interactions analyzed: 15
• Total true interactions: 11
• Strongest Interaction:
  • Chains: C-D
  • Int. Res.: 158
  • Norm. En. per Res.: -4.4114
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-125.4114	-57.2732	-455.601	-638.2855	155	41	23	18587	4	52	48
A-C	-48.7146	-87.6784	-195.226	-331.619	80	14	4	8692	2	44	37
A-D	-21.6348	1.4291	-51.1711	-71.3768	48	9	1	2566	1	20	10
B-C	0.0	5.4328	-17.093	-11.6602	17	1	0	654	0	11	11
B-D	-9.5889	-63.827	-5.0263	-78.4422	39	7	0	1437	5	27	19
C-D	-126.3887	-86.2622	-484.349	-696.9999	158	50	22	19622	8	56	55
C-E	0.0	0.267	-37.7011	-37.4341	43	3	1	2205	0	16	12
C-F	-29.3687	-47.0249	-181.129	-257.5226	82	32	3	8053	3	41	33
D-E	-12.1284	9.8172	-35.7973	-38.1085	46	5	0	1604	0	28	18
D-F	0.0	-10.0045	-17.3609	-27.3654	38	0	0	1122	1	19	19
E-F	-114.0172	-19.7819	-443.237	-577.0362	161	53	24	19356	1	54	49

Interface residues

• A-B: ALA103A, ALA137A, ALA137B, ALA157A, ALA203A, ALA203B, ALA207A, ALA207B, ARG116A, ARG116B, ARG117A, ARG117B, ARG156A, ARG32A, ARG32B, ASN128A, ASN128B, ASN38A, ASN38B, ASP104B, ASP105A, ASP105B, ASP112A, ASP112B, ASP132A, ASP132B, CYS167B, GLN155A, GLU111A, GLU111B, GLU118A, GLU118B, GLU122A, GLU122B, GLU123A, GLU123B, GLU131A, GLU131B, GLU140A, GLU140B, GLU199A, GLU199B, GLU37B, GLY114A, GLY114B, GLY126A, GLY126B, GLY148A, GLY148B, GLY159A, GLY159B, GLY39A, GLY39B, GLY41A, GLY41B, HIS153A, HIS153B, ILE115A, ILE115B, ILE129A, ILE129B, ILE147A, ILE147B, ILE149A, ILE149B, ILE205A, ILE205B, ILE206A, ILE206B, ILE36A, ILE36B, ILE42A, ILE42B, LEU110A, LEU110B, LEU124A, LEU124B, LEU141A, LEU141B, LEU151A, LEU151B, LEU196B, LEU200A, LEU200B, LEU201A, LEU201B, LYS107A, LYS107B, LYS113A, LYS113B, LYS138A, LYS138B, LYS139A, LYS139B, LYS152A, LYS152B, LYS154A, LYS198A, LYS198B, LYS202A, LYS202B, LYS212A, LYS34A, LYS34B, LYS35B, LYS48B, MET163B, PHE102A, PHE102B, PHE127A, PHE127B, PHE146A, PHE146B, PHE204A, PHE204B, PRO135A, PRO135B, PRO43A, PRO43B, SER108A, SER108B, SER119A, SER119B, SER208A, SER208B, SER45B, THR120A, THR120B, TYR109A, TYR109B, TYR125A, TYR125B, TYR130A, TYR130B, TYR134A, TYR134B, TYR160A, TYR160B, TYR165A, TYR165B, VAL106A, VAL106B, VAL133A, VAL133B, VAL136A, VAL136B, VAL150A, VAL150B, VAL158A, VAL158B, VAL164A, VAL164B, VAL40A, VAL40B, VAL44B
• A-C: ALA182A, ALA207C, ALA69A, ARG116C, ARG117C, ARG156A, ARG183A, ARG184A, ARG26A, ARG32A, ARG47A, ARG70A, ASN121C, ASN128C, ASN185A, ASN213C, ASP105C, ASP112C, ASP132C, ASP71A, GLN155A, GLN161A, GLN161C, GLN65A, GLU111C, GLU118C, GLU122C, GLU123C, GLU131C, GLU209C, GLU8A, GLY114C, GLY159C, HIS153C, HIS3A, ILE115C, ILE129C, ILE206C, ILE2A, ILE31A, LEU110C, LEU151C, LEU4A, LYS107C, LYS113C, LYS152C, LYS212C, LYS30A, LYS48A, LYS49A, MET163A, MET163C, MET1A, PRO135C, PRO27A, SER108C, SER119C, SER162C, SER208C, SER29A, SER45A, SER50A, SER67A, SER6A, THR120C, THR210C, THR25A, THR28A, THR46A, THR5A, TYR109C, TYR125C, TYR130C, TYR134C, TYR160C, TYR76A, VAL106C, VAL133C, VAL181A, VAL7A
• A-D: ALA9A, ARG156A, ARG26A, ARG32D, ARG47A, ARG70A, ASN185A, ASN38D, ASP71A, GLN155A, GLU122D, GLU123D, GLU131D, GLU140D, GLU37D, GLU8A, GLY126D, GLY39D, GLY41D, HIS3A, ILE129D, ILE2A, ILE42D, LEU124D, LEU4A, LYS113D, LYS34D, LYS48A, LYS49A, MET1A, PHE127D, PHE146D, PRO27A, PRO43A, PRO43D, SER10A, SER45A, SER6A, THR28A, THR5A, TYR125D, TYR134D, VAL136D, VAL150D, VAL181A, VAL40D, VAL44D, VAL7A
• B-C: ARG47B, ARG70B, ASN38C, ASP59C, ASP71B, GLU37C, GLU8B, GLY39C, ILE36C, LYS35C, LYS48B, PHE146C, SER45B, TYR125C, TYR76B, VAL40C, VAL7B
• B-D: ALA182B, ARG116D, ARG183B, ARG184B, ARG26B, ARG47B, ASN121D, ASN185B, ASN213D, ASP104D, ASP105D, ASP112D, GLN161B, GLU111D, GLU118D, GLU122D, GLU209D, GLY114D, GLY159B, LYS107D, LYS113D, LYS212D, LYS30B, LYS48B, PRO27B, SER108D, SER119D, SER29B, SER45B, THR120D, THR210D, THR25B, THR28B, THR46B, TYR109D, TYR160D, VAL106D, VAL158B, VAL181B
• C-D: ALA103C, ALA103D, ALA137C, ALA137D, ALA157D, ALA203C, ALA203D, ALA207C, ALA207D, ARG116C, ARG116D, ARG117C, ARG117D, ARG156D, ARG32C, ARG32D, ARG47C, ASN128C, ASN128D, ASP104C, ASP104D, ASP105C, ASP105D, ASP112C, ASP112D, ASP132C, ASP132D, GLN155D, GLU111C, GLU111D, GLU118C, GLU118D, GLU122C, GLU122D, GLU123C, GLU123D, GLU131C, GLU131D, GLU140C, GLU140D, GLU199C, GLU199D, GLU37C, GLU63C, GLU63D, GLY114C, GLY114D, GLY126C, GLY126D, GLY148C, GLY148D, GLY159C, GLY159D, GLY39C, GLY39D, GLY41C, GLY41D, HIS153C, HIS153D, ILE115C, ILE115D, ILE129C, ILE129D, ILE147C, ILE147D, ILE149C, ILE149D, ILE205C, ILE205D, ILE206C, ILE206D, ILE42C, LEU110C, LEU110D, LEU124C, LEU124D, LEU141C, LEU141D, LEU151C, LEU151D, LEU200C, LEU200D, LEU201C, LEU201D, LYS107C, LYS107D, LYS113C, LYS113D, LYS138C, LYS138D, LYS139C, LYS139D, LYS152C, LYS152D, LYS154D, LYS198C, LYS198D, LYS202C, LYS202D, LYS212C, LYS212D, LYS34C, LYS34D, LYS35C, LYS48C, LYS49C, PHE102C, PHE102D, PHE127C, PHE127D, PHE146C, PHE146D, PHE204C, PHE204D, PRO135C, PRO135D, PRO27C, PRO43C, PRO43D, SER108C, SER108D, SER119C, SER119D, SER208C, SER208D, SER29C, SER45C, THR120C, THR120D, THR28C, THR28D, THR46C, TYR109C, TYR109D, TYR125C, TYR125D, TYR130C, TYR130D, TYR134C, TYR134D, TYR160C, TYR160D, TYR165C, VAL106C, VAL106D, VAL133C, VAL133D, VAL136C, VAL136D, VAL150C, VAL150D, VAL158D, VAL164C, VAL164D, VAL33C, VAL40C, VAL40D, VAL44C
• C-E: ALA9C, ARG21C, ARG32E, ARG47C, ARG70C, ASN38E, ASP71C, GLU122E, GLU123E, GLU131E, GLU140E, GLU37E, GLU8C, GLY39E, GLY41E, HIS3C, ILE129E, ILE2C, ILE36E, ILE42E, LEU124E, LEU4C, LYS138E, LYS139E, LYS34E, LYS48C, PRO23C, PRO27C, PRO43E, SER10C, SER45C, SER6C, THR28C, THR5C, TYR125E, TYR134E, TYR76C, VAL11C, VAL136E, VAL150E, VAL187C, VAL40E, VAL7C
• C-F: ALA207F, ALA69C, ARG116F, ARG117F, ARG184C, ARG26C, ARG32C, ARG47C, ARG70C, ASN121F, ASN128F, ASN185C, ASN213F, ASP105F, ASP112F, ASP132F, ASP71C, GLN161C, GLN161F, GLU111F, GLU118F, GLU122F, GLU123F, GLU131F, GLU209F, GLU8C, GLY114F, GLY126F, GLY159F, GLY72C, HIS153C, HIS211F, HIS3C, ILE115F, ILE129F, ILE2C, ILE31C, LEU110F, LEU151F, LEU4C, LYS107F, LYS113F, LYS152F, LYS212F, LYS30C, LYS48C, LYS49C, LYS73C, MET163C, MET1C, PHE127F, PRO135F, PRO23C, PRO27C, SER108F, SER119F, SER162F, SER208F, SER29C, SER45C, SER50C, SER67C, SER6C, THR120F, THR210F, THR25C, THR28C, THR46C, THR5C, TYR109F, TYR130F, TYR134F, TYR160F, TYR68C, TYR74C, TYR76C, VAL106F, VAL133F, VAL150F, VAL158F, VAL181C, VAL7C
• D-E: ALA157D, ARG116E, ARG117E, ARG156D, ARG184D, ARG26D, ARG47D, ARG70D, ASN121E, ASN128E, ASP112E, ASP71D, GLN155D, GLN161D, GLN65D, GLU118E, GLU122E, GLU123E, GLU131E, GLU8D, GLY114E, GLY159D, GLY72D, HIS153D, ILE115E, ILE129E, LYS107E, LYS113E, LYS152D, LYS154D, LYS30D, LYS48D, MET163D, SER108E, SER119E, SER29D, SER67D, THR120E, THR25D, THR28D, TYR130E, TYR160D, TYR160E, TYR76D, VAL133E, VAL158D
• D-F: ALA9D, ARG156D, ARG26D, ARG58F, ARG70D, ARG80D, ARG83D, ASN38F, ASN56F, ASP59F, ASP71D, ASP75D, GLU131F, GLU140F, GLU37F, GLU55F, GLU77D, GLU8D, GLY144F, GLY39F, GLY72D, ILE147F, ILE36F, LEU141F, LEU84D, LYS113F, LYS138F, LYS139F, LYS48D, LYS73D, PHE146F, PRO142F, SER108F, SER10D, THR28D, TYR125F, TYR76D, VAL11D
• E-F: ALA103F, ALA137E, ALA137F, ALA157E, ALA203E, ALA203F, ALA207E, ALA207F, ARG116E, ARG116F, ARG117E, ARG117F, ARG156E, ARG26F, ARG32E, ARG32F, ASN128E, ASN128F, ASN38E, ASP104E, ASP104F, ASP105E, ASP105F, ASP112E, ASP112F, ASP132E, ASP132F, GLN155E, GLU111E, GLU111F, GLU118E, GLU118F, GLU122E, GLU122F, GLU123E, GLU123F, GLU131E, GLU131F, GLU140E, GLU140F, GLU199E, GLU199F, GLU37F, GLY114E, GLY114F, GLY126E, GLY126F, GLY148E, GLY148F, GLY159E, GLY159F, GLY39E, GLY39F, GLY41E, GLY41F, HIS153E, ILE115E, ILE115F, ILE129E, ILE129F, ILE147E, ILE147F, ILE149E, ILE149F, ILE205E, ILE205F, ILE206E, ILE206F, ILE31F, ILE36F, ILE42F, LEU110E, LEU110F, LEU124E, LEU124F, LEU141E, LEU141F, LEU151E, LEU151F, LEU196E, LEU200E, LEU200F, LEU201E, LEU201F, LYS107E, LYS107F, LYS113E, LYS113F, LYS138E, LYS138F, LYS139E, LYS139F, LYS152E, LYS152F, LYS154E, LYS198E, LYS198F, LYS202E, LYS202F, LYS212E, LYS30F, LYS34E, LYS34F, LYS35F, LYS48F, PHE102E, PHE102F, PHE127E, PHE127F, PHE146E, PHE204E, PHE204F, PRO135E, PRO135F, PRO27E, PRO27F, PRO43E, PRO43F, SER108E, SER108F, SER119E, SER119F, SER208E, SER208F, SER29E, SER29F, SER45E, SER45F, THR120E, THR120F, THR28E, THR28F, THR46F, TYR109E, TYR109F, TYR125E, TYR125F, TYR130E, TYR130F, TYR134E, TYR134F, TYR160E, TYR160F, TYR165E, VAL106E, VAL106F, VAL133E, VAL133F, VAL136E, VAL136F, VAL150E, VAL150F, VAL158E, VAL158F, VAL164E, VAL164F, VAL33F, VAL40E, VAL40F, VAL44E, VAL44F