2DF7
crystal structure of infectious bursal disease virus vp2 subviral particle
Total interactions analyzed 190
Total true interactions 43
Strongest Interaction Chains I-J
Int. Res. 224
Norm. En. per Res. -3.5038
Hub Node C(6)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -26.7142 -9.3333 -222.652 -258.6996 120 23 5 10497 3 19 19
A-D 0.0 0.0 -0.0073 -0.0073 2 0 0 1 0 0 0
A-F -207.235 114.4849 -664.999 -757.7492 224 32 23 26537 10 54 60
A-L 0.0 0.0 -24.5528 -24.5528 12 1 1 713 0 0 0
A-T -27.7878 16.1693 13 ARG109T, ARG16T, ARG407A, ARG423T, ASN142A, ASP421A, GLU162A, GLU424T, GLY115T, LEU113T, LEU120A, THR44T, TYR118A
B-D -35.1525 19.9722 -201.904 -217.0843 114 7 2 9142 2 19 20
B-L 0.0 0.0 -17.6764 -17.6764 10 0 1 372 0 0 0
C-E -183.8232 113.5171 -640.205 -710.5111 224 38 22 26177 11 49 59
C-L -217.2437 120.5674 -662.235 -758.9113 226 31 22 26346 11 51 60
C-M 0.0 0.0 -0.0007 -0.0007 2 0 0 2 0 0 0
C-N -21.4086 9.5557 -150.251 -162.1038 103 19 1 7805 2 19 18
C-O -26.9106 0.0 -94.6097 -121.5203 47 6 1 3779 0 8 5
C-R -13.6444 25.0729 9 ARG16R, ARG407C, ARG423R, ASN142C, ASN157C, ASP421C, GLU424R, THR44R, VAL365R
D-E -29.1752 0.0 -87.951 -117.1262 50 9 1 3907 0 8 5
D-L -28.7596 25.2037 -171.395 -174.9509 111 19 3 9228 1 20 20
E-L -176.1007 122.2527 -633.433 -687.281 224 31 21 26224 9 50 61
E-O -15.4245 1.3217 -183.725 -197.8278 109 7 2 8672 0 19 20
F-S -20.55 15.2014 12 ARG16F, ARG407S, ARG423F, ASN142S, ASN157S, ASN46F, ASP421S, GLU424F, ILE11F, THR123S, THR44F, VAL365F
F-T -28.2046 0.0 6 ARG39F, ARG39T, ASN382F, ASN382T, SER95T, TYR96T
G-K -187.3184 108.3352 -643.278 -722.2612 228 38 22 26658 8 52 61
G-M -229.7571 110.5995 -665.153 -784.3106 226 31 22 26783 10 52 61
G-S -16.7724 4.5999 14 ARG109S, ARG16S, ARG407G, ARG423S, ASN142G, ASN157G, ASP421G, GLU162G, GLU418G, GLU424S, MET427S, THR44S, TYR425G, VAL365S
H-I -8.7388 13.9659 -173.329 -168.1018 112 10 2 8581 2 19 20
H-N -218.7348 114.012 -638.855 -743.5778 224 37 20 26109 10 51 61
H-O -209.529 116.1835 -671.705 -765.0505 227 31 23 26620 10 53 62
I-J -226.87 114.8738 -672.855 -784.8512 224 34 20 26526 11 51 60
I-N -19.8422 0.0 -96.9952 -116.8374 47 4 1 3750 0 8 5
I-Q -202.7254 121.2651 -1.4445 -82.9048 63 0 0 113 0 0 4
J-K -10.6817 -17.1808 -179.993 -207.8555 111 10 2 8838 4 19 20
J-P -15.9395 6.5231 -174.7 -184.1164 105 9 1 8117 3 19 19
J-Q -220.6645 127.9193 -7.4139 -100.1591 62 1 0 271 0 1 3
K-M -180.4828 107.9654 -636.207 -708.7243 224 35 21 26223 11 52 61
K-Q -25.2964 0.0 -0.0259 -25.3223 8 0 0 17 0 0 0
L-R -25.5131 0.0 6 ARG39L, ARG39R, ASN382L, ASN382R, TYR96L, TYR96R
L-T -26.6271 -1.2375 13 ARG109L, ARG16L, ARG407T, ARG423L, ASN157T, ASN46L, ASP421T, GLU162T, GLU418T, GLU424L, THR123T, TYR45L, VAL365L
M-Q -9.1304 -7.0362 -26.994 -43.1606 32 6 0 1507 0 2 2
M-R -14.06 1.7754 10 ARG16M, ARG407R, ARG423M, ASN46M, ASP421R, GLU418R, GLU424M, LEU113M, LEU120R, THR123R
M-S -28.4205 0.0 6 ARG39M, ARG39S, ASN382M, ASN382S, SER95S, TYR96M
N-O -221.9594 121.9673 -656.49 -756.4821 227 32 22 26417 10 50 60
N-Q -11.3488 -1.3433 0.0 -12.6921 12 0 0 0 0 0 0
R-S -203.0534 108.1833 58 ALA149R, ALA380S, ARG179S, ARG202R, ARG202S, ARG204R, ARG274S, ARG347R, ARG389S, ARG405R, ASN150R, ASN233R, ASN341R, ASP138R, ASP153R, ASP174R, ASP174S, ASP182S, ASP190S, ASP198S, ASP201R, ASP201S, ASP212R, ASP213R, ASP258S, ASP287R, ASP30R, ASP30S, ASP31R, ASP31S, GLN130R, GLU135R, GLU245R, GLU300S, GLU34S, GLU386S, GLU404R, GLU406R, ILE187S, LEU189S, LEU229R, LEU33S, LYS192S, LYS35S, LYS381S, LYS399R, PRO185S, SER172R, SER200S, SER231R, THR196S, THR207R, THR209R, THR385S, TYR173R, TYR98S, VAL194S, VAL205R
R-T -185.0189 123.3644 57 ALA149T, ALA380R, ARG179R, ARG202R, ARG202T, ARG204T, ARG274R, ARG347T, ARG389R, ARG405T, ASN150T, ASN233T, ASN293R, ASP138T, ASP153T, ASP174R, ASP174T, ASP182R, ASP190R, ASP198R, ASP201R, ASP201T, ASP212T, ASP213T, ASP258R, ASP287T, ASP30R, ASP30T, ASP31R, ASP31T, GLU135T, GLU245T, GLU300R, GLU34R, GLU386R, GLU404T, GLU406T, GLY244T, ILE187R, LEU189R, LEU229T, LEU33R, LYS192R, LYS35R, LYS381R, LYS399T, PRO185R, SER172T, SER231T, THR137T, THR196R, THR207T, THR209T, THR385R, TYR173T, VAL194R, VAL205T
S-T -195.945 115.9041 59 ALA149S, ALA380T, ARG179T, ARG202S, ARG202T, ARG204S, ARG274T, ARG347S, ARG389T, ARG405S, ASN150S, ASN233S, ASN341S, ASP138S, ASP153S, ASP174S, ASP174T, ASP182T, ASP190T, ASP198T, ASP201S, ASP201T, ASP212S, ASP213S, ASP258T, ASP287S, ASP30S, ASP30T, ASP31S, ASP31T, ASP391T, GLN130S, GLU135S, GLU245S, GLU300T, GLU34T, GLU386T, GLU404S, GLU406S, ILE187T, LEU189T, LEU229S, LEU33T, LYS192T, LYS35T, LYS381T, LYS399S, PRO185T, SER172S, SER200T, SER231S, THR196T, THR207S, THR209S, THR385T, TYR173S, TYR98T, VAL194T, VAL205S