2D3O

structure of ribosome binding domain of the trigger factor on the 50s ribosomal subunit from d. radiodurans

• Total interactions analyzed: 10
• Total true interactions: 4
• Strongest Interaction:
  • Chains: R-1
  • Int. Res.: 30
  • Norm. En. per Res.: -3.9078
• Hub Node: R(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
R-W	-15.5094	-0.3449	-46.4682	-62.3225	40	23	3	3212	0	9	11
R-1	-25.868	-32.6795	-58.6865	-117.234	30	14	0	2953	3	11	2
S-1	0.0	0.0	-19.4103	-19.4103	18	5	0	858	0	1	0
W-1	0.0	0.0	-45.4285	-45.4285	21	4	0	1347	0	0	0

Interface residues

• R-W: ALA20W, ALA32W, ALA33W, ALA34W, ALA41R, ALA45R, ALA9R, ARG21W, ARG29W, ASP19W, ASP5R, GLN31W, GLN36W, GLN8R, GLN94R, GLU24W, GLU27W, GLU89R, GLY35W, HIS3R, ILE12R, ILE42R, ILE6R, LEU25W, LEU28W, LEU7R, LEU91R, LYS22W, LYS23W, MET26W, PHE27R, PHE30W, PHE46R, PRO10R, SER2R, SER30R, TRP28R, TYR4R, VAL11R, VAL29R
• R-1: ALA481, ALA90R, ALA92R, ARG441, ARG501, ARG561, ASN551, GLN94R, GLU14R, GLU21R, GLU89R, GLY421, GLY93R, ILE12R, LEU91R, LYS15R, LYS471, LYS511, MET20R, PHE431, PRO10R, PRO411, PRO451, PRO491, SER13R, SER18R, TYR17R, VAL11R, VAL401, VAL521
• S-1: ARG671, ARG691, ASN64S, ASP681, GLN651, GLN66S, GLU721, GLY601, LEU701, LEU711, MET62S, PRO65S, SER61S, SER641, THR63S, TYR611, TYR751, VAL661
• W-1: ALA32W, ALA33W, ALA34W, ALA38W, ARG561, ASN551, GLN31W, GLN36W, GLN39W, GLU541, GLY35W, GLY421, GLY581, ILE531, LEU37W, LYS511, LYS591, PHE30W, PRO411, VAL521, VAL571