2D1P

crystal structure of heterohexameric tusbcd proteins, which are crucial for the trna modification

• Total interactions analyzed: 36
• Total true interactions: 18
• Strongest Interaction:
  • Chains: D-H
  • Int. Res.: 43
  • Norm. En. per Res.: -4.2419
• Hub Node: D(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-31.3047	-5.0744	-183.22	-219.5991	73	14	8	8019	6	14	16
A-C	-31.2517	-14.6191	-204.272	-250.1429	68	10	7	7625	2	11	10
A-H	0.0	-27.0213	-56.2664	-83.2877	38	3	1	2460	2	8	12
B-C	-35.2138	18.1143	-127.788	-144.8875	69	14	3	6260	3	16	17
B-F	0.0	-4.7901	-14.1267	-18.9168	17	1	0	800	0	1	1
B-H	-3.6455	-2.0358	-68.7546	-74.436	41	0	0	3152	0	7	4
D-E	-18.9352	5.5347	-142.961	-156.3614	70	11	7	7001	5	13	15
D-F	-44.806	-15.6154	-209.769	-270.1904	69	13	7	7730	1	11	9
D-G	-28.4638	-24.0586	-264.77	-317.2925	81	5	4	10776	0	16	4
D-H	-30.2881	-52.0886	-100.025	-182.4017	43	8	2	3549	6	7	8
E-F	-33.6248	23.7961	-132.657	-142.4857	66	8	3	6178	3	16	16
E-G	-29.0713	-51.4654	-93.2669	-173.8036	41	6	2	3387	6	7	8
E-I	-31.1759	-4.7443	-207.61	-243.5302	73	8	5	8300	1	20	19
F-H	-34.4372	-5.3376	-211.933	-251.7078	72	6	5	8437	1	20	20
F-I	0.0	0.0	-54.1475	-54.1475	29	0	1	2307	0	4	6
G-H	-36.9166	-1.8728	-170.538	-209.3274	71	12	7	7755	6	14	16
G-I	-21.3816	-15.0092	-200.404	-236.7948	68	10	6	7498	1	9	9
H-I	-26.9988	16.7164	-130.565	-140.8475	67	10	3	6166	3	16	17

Interface residues

• A-B: ALA114A, ALA116A, ALA118A, ALA16B, ALA17B, ALA24B, ALA27B, ALA30B, ALA4A, ALA5B, ALA80A, ALA81A, ALA82A, ARG118B, ARG124A, ARG19B, ARG2A, ARG3B, ARG41A, ARG59B, ARG84A, ARG85A, ASP114B, ASP123A, ASP23B, ASP33B, ASP34B, CYS122A, CYS78A, GLN127A, GLN16A, GLU117A, GLU20B, GLU42A, GLY111A, GLY113A, GLY18B, GLY21B, GLY43A, ILE116B, ILE4B, LEU112A, LEU115A, LEU117B, LEU120A, LEU22B, LEU25B, LEU26B, LEU31B, LEU35B, LYS2B, MET1A, MET1B, PHE119B, PHE128A, PHE38A, PHE6B, SER119A, SER29B, SER9B, THR10B, THR121A, THR15B, THR28B, THR32B, THR8A, TYR40A, VAL115B, VAL125A, VAL126A, VAL44A, VAL6A, VAL7B
• A-C: ALA17A, ALA20A, ALA24A, ALA26A, ALA29A, ALA4A, ALA63C, ALA94C, ARG124A, ARG2A, ARG64C, ARG7C, ARG84C, ASP123A, ASP30A, ASP32C, ASP60C, ASP78C, ASP81C, GLN127A, GLN15A, GLN16A, GLN22A, GLN25A, GLN31C, GLN92C, GLU59C, GLY-1A, GLY31A, GLY33C, GLY9A, HIS32A, HIS6C, HIS89C, ILE28A, ILE5A, LEU27A, LEU28C, LEU2C, LEU30C, LEU57C, LEU85C, LYS88C, MET1A, MET93C, PHE128A, PHE21A, PHE23A, PHE3A, PHE82C, PRO90C, SER0A, SER18A, SER19A, SER91C, THR14A, THR4C, THR80C, THR86C, THR8A, TRP95C, TYR79C, VAL125A, VAL126A, VAL34C, VAL6A, VAL83C, VAL87C
• A-H: ALA105H, ALA111H, ALA80A, ALA93A, ARG107H, ARG108H, ARG3H, ARG84A, ARG95A, ASN112H, ASP104H, GLN75H, GLN91H, GLU102H, GLU109H, GLU92A, GLU97H, GLY111A, GLY113A, GLY94A, GLY97A, LEU101H, LEU106H, LEU109A, LEU110H, LEU112A, LEU83A, LEU96A, LEU98A, PHE38H, PRO100H, SER110A, THR91A, THR99H, TRP77H, TYR113H, TYR40A, VAL79A
• B-C: ALA103B, ALA111B, ALA15C, ALA16C, ALA41B, ALA5B, ALA80B, ALA81B, ALA94C, ARG107B, ARG108B, ARG118B, ARG19C, ARG3B, ARG7C, ARG84B, ARG86B, ASN112B, ASP104B, ASP114B, ASP13C, ASP25C, ASP42B, CYS79B, GLN92C, GLU102B, GLU109B, GLU23C, GLU85B, GLY43B, HIS3C, HIS6C, HIS89C, ILE116B, ILE40B, ILE4B, ILE52C, LEU101B, LEU106B, LEU110B, LEU117B, LEU17C, LEU18C, LEU20C, LEU21C, LEU2C, LEU5C, LEU83B, LYS2B, MET1C, MET93C, PHE119B, PHE38B, PHE6B, PRO51C, PRO90C, SER22C, SER82B, SER91C, SER9B, THR10B, THR12C, THR15B, THR4C, TRP95C, TYR113B, VAL115B, VAL44B, VAL7B
• B-F: ARG64F, ASN72F, ASP39F, GLN69F, GLY40F, GLY65F, GLY68F, GLY69B, ILE70F, LEU66F, LEU67B, LEU70B, LYS66B, SER71F, THR67F, TYR71B, VAL38F
• B-H: ALA24B, ALA27B, ALA30B, ALA63B, ALA80H, ARG19B, ARG59B, ARG84H, ASP23B, ASP60B, ASP89H, GLN51H, GLN91H, GLU102H, GLU20B, GLU97H, GLY50H, GLY87H, ILE73B, LEU22B, LEU25B, LEU26B, LEU31B, LEU47H, LEU48H, LEU67B, LEU70B, LEU88H, LYS66B, PHE65B, PHE94H, PRO49H, PRO90H, PRO93H, SER29B, THR28B, THR64B, THR92H, TYR61B, TYR71B, VAL95H
• D-E: ALA114D, ALA116D, ALA118D, ALA16E, ALA17E, ALA24E, ALA27E, ALA30E, ALA4D, ALA5E, ALA80D, ALA81D, ALA82D, ARG118E, ARG124D, ARG19E, ARG2D, ARG3E, ARG41D, ARG59E, ARG84D, ARG85D, ASP114E, ASP123D, ASP23E, ASP33E, ASP34E, CYS122D, CYS78D, GLN127D, GLN16D, GLU117D, GLU20E, GLU42D, GLY111D, GLY113D, GLY18E, GLY21E, GLY43D, ILE116E, ILE4E, LEU112D, LEU115D, LEU117E, LEU120D, LEU22E, LEU25E, LEU26E, LEU31E, LEU35E, LYS2E, MET1D, PHE119E, PHE128D, PHE38D, PHE6E, SER119D, SER29E, THR10E, THR121D, THR15E, THR28E, THR32E, THR8D, TYR40D, VAL115E, VAL125D, VAL126D, VAL44D, VAL6D
• D-F: ALA17D, ALA20D, ALA24D, ALA26D, ALA29D, ALA4D, ALA63F, ALA94F, ARG124D, ARG2D, ARG41D, ARG64F, ARG7F, ARG84F, ASP123D, ASP30D, ASP32F, ASP60F, ASP78F, ASP81F, GLN127D, GLN15D, GLN16D, GLN22D, GLN25D, GLN31F, GLN92F, GLU59F, GLY-1D, GLY31D, GLY33F, GLY9D, HIS32D, HIS6F, HIS89F, ILE28D, ILE5D, LEU27D, LEU28F, LEU2F, LEU30F, LEU57F, LEU85F, LYS88F, MET1D, MET93F, PHE128D, PHE21D, PHE23D, PHE3D, PHE82F, PRO90F, SER0D, SER18D, SER19D, SER91F, THR14D, THR4F, THR80F, THR86F, THR8D, TRP95F, TYR79F, VAL125D, VAL126D, VAL34F, VAL6D, VAL83F, VAL87F
• D-G: ALA11D, ALA11G, ALA54D, ALA54G, ALA80D, ALA80G, ALA81D, ALA81G, ALA82D, ALA82G, ALA93D, ALA93G, ALA99D, ALA99G, ARG41D, ARG41G, ARG84D, ARG84G, ARG85D, ARG85G, ASN102D, ASN102G, ASN46G, ASN48D, ASN48G, ASP89D, ASP89G, GLN49D, GLN49G, GLU42D, GLU42G, GLU57D, GLU57G, GLU92D, GLU92G, GLY13D, GLY13G, GLY86D, GLY86G, GLY97D, GLY97G, GLY9D, LEU103D, LEU103G, LEU50D, LEU50G, LEU83D, LEU83G, LEU96D, LEU96G, LEU98D, LEU98G, PRO10D, PRO10G, PRO53D, PRO53G, SER100D, SER100G, SER101D, SER101G, SER52D, SER52G, THR14D, THR14G, THR51D, THR51G, TYR12D, TYR12G, TYR40G, TYR45D, TYR45G, VAL44D, VAL44G, VAL61D, VAL61G, VAL79D, VAL79G, VAL87D, VAL87G, VAL88D, VAL88G
• D-H: ALA16H, ALA17D, ALA17H, ALA20D, ALA54D, ALA55H, ALA58H, ALA63D, ARG19H, ARG59H, ASP23H, ASP54H, ASP56D, ASP59D, ASP60H, GLN15D, GLN16D, GLN22D, GLN25D, GLU20H, GLU57D, GLY13D, GLY14H, GLY18H, GLY21H, HIS13H, LEU57H, LEU60D, PHE21D, PHE23D, PHE58D, PRO10D, PRO12H, PRO53D, PRO53H, SER18D, SER19D, SER55D, THR14D, THR15H, TYR12D, TYR61H, VAL56H
• E-F: ALA103E, ALA111E, ALA15F, ALA16F, ALA41E, ALA5E, ALA80E, ALA81E, ALA94F, ARG107E, ARG108E, ARG118E, ARG19F, ARG3E, ARG7F, ARG84E, ARG86E, ASN112E, ASP104E, ASP114E, ASP13F, ASP25F, ASP42E, CYS79E, GLN92F, GLU102E, GLU109E, GLU23F, GLU85E, GLY43E, HIS3F, HIS6F, HIS89F, ILE116E, ILE40E, LEU106E, LEU110E, LEU117E, LEU17F, LEU18F, LEU20F, LEU21F, LEU2F, LEU5F, LEU83E, LYS2E, MET1F, MET93F, PHE119E, PHE38E, PHE6E, PHE8E, PRO51F, PRO90F, SER22F, SER82E, SER91F, SER9E, THR10E, THR12F, THR4F, TRP95F, TYR113E, VAL115E, VAL44E, VAL7E
• E-G: ALA16E, ALA17E, ALA17G, ALA20G, ALA54G, ALA55E, ALA58E, ALA63G, ARG19E, ARG59E, ASP23E, ASP54E, ASP56G, ASP59G, ASP60E, GLN15G, GLN16G, GLN22G, GLN25G, GLU20E, GLU57G, GLY13G, GLY14E, HIS13E, LEU57E, LEU60G, PHE21G, PHE23G, PHE58G, PRO10G, PRO12E, PRO53E, PRO53G, SER18G, SER19G, SER55G, THR14G, THR15E, TYR12G, TYR61E, VAL56E
• E-I: ALA11E, ALA36I, ALA37I, ALA41E, ALA55E, ALA58E, ALA63I, ARG118E, ARG42I, ARG64I, ARG7I, ARG84E, ARG86E, ASN41I, ASN58I, ASP32I, ASP39I, ASP42E, ASP54E, ASP60E, ASP60I, ASP89E, GLN31I, GLN46E, GLN51E, GLN69I, GLU59I, GLU85E, GLY14E, GLY33I, GLY40I, GLY43E, GLY50E, GLY65I, GLY87E, HIS13E, HIS6I, ILE62E, ILE62I, LEU11I, LEU30I, LEU44I, LEU48E, LEU57E, LEU57I, LEU61I, LEU66I, LEU83E, LEU88E, LYS52E, PHE45E, PHE94E, PRO12E, PRO49E, PRO53E, PRO93E, PRO9I, SER82E, SER8I, SER9E, THR10E, THR15E, THR35I, THR67I, THR92E, TRP10I, TYR43I, TYR61E, TYR79I, VAL34I, VAL38I, VAL44E, VAL56E
• F-H: ALA11H, ALA36F, ALA37F, ALA41H, ALA55H, ALA58H, ALA63F, ARG118H, ARG42F, ARG64F, ARG7F, ARG84H, ARG86H, ASN41F, ASN58F, ASP32F, ASP39F, ASP42H, ASP54H, ASP60F, ASP60H, ASP89H, GLN31F, GLN46H, GLN51H, GLN69F, GLU59F, GLU85H, GLY14H, GLY33F, GLY40F, GLY43H, GLY50H, GLY65F, GLY87H, HIS13H, HIS6F, ILE62F, ILE62H, LEU11F, LEU30F, LEU44F, LEU48H, LEU57F, LEU57H, LEU61F, LEU66F, LEU83H, LEU88H, LYS52H, PHE45H, PHE94H, PRO12H, PRO49H, PRO53H, PRO93H, PRO9F, SER82H, SER8F, SER9H, THR10H, THR15H, THR35F, THR67F, THR92H, TRP10F, TYR43F, TYR79F, VAL34F, VAL38F, VAL44H, VAL56H
• F-I: ALA15F, ALA15I, ALA16F, ALA16I, ARG19F, ARG19I, ARG42F, ARG42I, ARG7F, ARG7I, ASP13F, ASP13I, LEU11F, LEU11I, LEU18I, PHE14F, PHE14I, PRO9F, PRO9I, SER8F, SER8I, THR12F, THR12I, TRP10F, TRP10I, TRP95F, TRP95I, TYR43F, TYR43I
• G-H: ALA114G, ALA116G, ALA118G, ALA16H, ALA17H, ALA24H, ALA27H, ALA30H, ALA4G, ALA5H, ALA80G, ALA81G, ALA82G, ARG118H, ARG124G, ARG19H, ARG2G, ARG3H, ARG41G, ARG59H, ARG84G, ARG85G, ASP114H, ASP123G, ASP23H, ASP33H, ASP34H, CYS122G, CYS78G, GLN127G, GLN16G, GLU117G, GLU20H, GLU42G, GLY111G, GLY113G, GLY18H, GLY21H, GLY43G, ILE116H, ILE4H, LEU112G, LEU115G, LEU117H, LEU120G, LEU22H, LEU25H, LEU26H, LEU31H, LEU35H, LYS2H, MET1G, PHE119H, PHE128G, PHE38G, PHE6H, SER119G, SER29H, THR10H, THR121G, THR15H, THR28H, THR32H, THR8G, TYR40G, VAL115H, VAL125G, VAL126G, VAL44G, VAL6G, VAL7H
• G-I: ALA17G, ALA20G, ALA24G, ALA26G, ALA29G, ALA4G, ALA63I, ALA94I, ARG124G, ARG2G, ARG64I, ARG7I, ARG84I, ASP123G, ASP30G, ASP32I, ASP60I, ASP78I, ASP81I, GLN127G, GLN15G, GLN16G, GLN22G, GLN25G, GLN31I, GLN92I, GLU59I, GLY-1G, GLY31G, GLY33I, GLY9G, HIS32G, HIS6I, HIS89I, ILE28G, ILE5G, LEU27G, LEU28I, LEU2I, LEU30I, LEU57I, LEU85I, LYS88I, MET1G, MET93I, PHE128G, PHE21G, PHE23G, PHE3G, PHE82I, PRO90I, SER0G, SER18G, SER19G, SER91I, THR14G, THR4I, THR80I, THR86I, THR8G, TRP95I, TYR79I, VAL125G, VAL126G, VAL34I, VAL6G, VAL83I, VAL87I
• H-I: ALA103H, ALA111H, ALA15I, ALA16I, ALA41H, ALA5H, ALA80H, ALA81H, ALA94I, ARG107H, ARG108H, ARG118H, ARG19I, ARG3H, ARG7I, ARG84H, ARG86H, ASN112H, ASP104H, ASP114H, ASP13I, ASP25I, ASP42H, CYS79H, GLN92I, GLU102H, GLU109H, GLU23I, GLU85H, GLY43H, HIS3I, HIS6I, HIS89I, ILE116H, ILE40H, ILE4H, LEU101H, LEU106H, LEU110H, LEU117H, LEU17I, LEU18I, LEU20I, LEU21I, LEU2I, LEU5I, LEU83H, LYS2H, MET1I, MET93I, PHE119H, PHE38H, PHE8H, PRO51I, PRO90I, SER22I, SER82H, SER91I, SER9H, THR10H, THR12I, THR4I, TRP95I, TYR113H, VAL115H, VAL44H, VAL7H