2CW0
crystal structure of thermus thermophilus rna polymerase holoenzyme at 3.3 angstroms resolution
Total interactions analyzed 66
Total true interactions 21
Strongest Interaction Chains D-E
Int. Res. 174
Norm. En. per Res. -3.8762
Hub Node A(3)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -15.0462 8.3497 -357.599 -364.2955 133 35 17 16792 1 26 27
A-C -91.8946 -215.1668 -436.142 -743.2034 204 63 6 21396 22 120 107
A-D 0.0 5.3094 -2.5539 2.7555 9 0 0 231 0 6 5
B-C -3.1146 -56.1123 -23.9117 -83.1386 36 6 0 1770 1 14 19
B-D -23.038 -95.3274 -140.073 -258.4384 122 20 8 7993 6 55 45
B-E 0.0 0.0 -0.2372 -0.2372 5 0 0 54 0 0 0
C-D -347.2149 -295.7231 -2122.46 -2765.3979 759 310 82 102779 27 311 262
C-E 0.0 -30.6955 -15.1202 -45.8157 22 3 0 902 0 12 8
C-F -19.6189 41.9345 -274.616 -252.3004 174 15 5 14212 0 67 73
D-E -96.6021 -71.0975 -506.764 -674.4636 174 51 23 24269 8 76 56
D-F -166.5402 -278.7677 -841.703 -1287.0109 391 136 20 40073 22 217 171
K-L -21.1672 3.05 -341.618 -359.7351 142 47 13 16776 1 30 31
K-M -109.2599 -114.222 -387.759 -611.2408 187 45 8 17869 10 113 93
K-N 0.0 6.9153 -4.7452 2.1701 10 0 0 272 0 6 5
L-M -15.6246 -43.9687 -25.5376 -85.1309 33 3 0 1354 3 14 19
L-N -25.6843 -88.7704 -207.352 -321.8067 128 24 9 10118 7 56 45
M-N -230.1385 -192.906 -1874.18 -2297.2246 692 304 61 88582 18 269 251
M-O 0.0 -22.2118 3 ARG32O, ASP1075M, GLU1074M
M-P -5.3635 -21.3069 21 ARG376M, ARG772M, ARG775M, ASP377P, ASP423P, ASP714M, GLU285P, GLU305P, GLU336P, GLU379M, GLU421M, GLU764M, GLU770M, GLU771M, GLU780M, HIS337P, HIS728M, LYS309P, LYS325P, LYS373P, LYS716M
N-O -91.2974 -43.3888 35 ARG1213N, ARG1499N, ARG26O, ARG72O, ARG760N, ARG84O, ASN59O, ASP1488N, ASP56O, ASP57O, ASP7O, GLN1485N, GLN717N, GLU1219N, GLU1496N, GLU1497N, GLU3O, GLU61O, GLU663N, GLU67O, GLU88O, GLU925N, HIS640N, HIS767N, LYS1490N, LYS16O, LYS659N, LYS660N, LYS698N, LYS8O, LYS926N, THR38O, VAL1487N, VAL74O, VAL80O
N-P -116.8727 -154.4834 90 ALA133P, ARG104P, ARG140P, ARG159N, ARG178P, ARG184P, ARG256P, ARG259P, ARG41N, ARG455N, ARG545N, ARG546N, ARG550N, ARG553N, ARG572N, ARG598N, ARG601N, ARG613N, ARG615N, ARG622N, ARG675N, ARG86N, ASN593N, ASP155N, ASP160P, ASP211P, ASP326P, ASP331P, ASP335P, ASP377P, ASP419N, ASP420P, ASP423N, ASP451N, ASP453N, ASP523N, ASP539N, ASP542N, ASP55N, ASP605N, ASP79P, GLN185P, GLN218P, GLN560N, GLN90P, GLU101P, GLU156N, GLU167N, GLU179P, GLU189P, GLU214N, GLU215P, GLU30N, GLU313P, GLU318P, GLU374N, GLU375N, GLU389N, GLU40N, GLU436N, GLU459N, GLU564N, GLU87P, GLU97P, GLU98P, GLY137P, GLY206P, GLY561N, HIS143P, HIS175P, HIS337P, HIS386N, HIS388N, HIS86P, ILE376P, LYS131N, LYS134P, LYS171P, LYS28N, LYS325P, LYS426N, LYS428N, LYS54N, LYS556N, LYS64N, LYS671N, LYS82N, PHE535N, SER316P, VAL315P