2C5R

the structure of phage phi29 replication organizer protein p16.7 in complex with double stranded dna

• Total interactions analyzed: 28
• Total true interactions: 11
• Strongest Interaction:
  • Chains: E-F
  • Int. Res.: 86
  • Norm. En. per Res.: -5.1183
• Hub Node: A(5)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-51.5443	-39.1408	-294.135	-384.8201	87	22	6	13266	0	31	35
A-C	0.0	0.0	-18.2861	-18.2861	23	1	0	880	0	2	4
A-D	0.0	0.0	-4.6354	-4.6354	12	2	0	350	0	2	1
A-E	-25.1828	-14.604	-135.565	-175.3518	56	10	3	6496	2	23	11
A-F	0.0	0.0	-12.5664	-12.5664	24	1	0	754	0	2	7
B-C	-22.779	-10.9365	-149.667	-183.3826	56	13	3	6577	2	22	11
B-D	0.0	0.0	-20.8402	-20.8402	23	1	0	1018	0	1	6
B-E	0.0	0.0	-13.0055	-13.0055	20	0	0	626	0	1	4
B-F	0.0	0.0	-7.5609	-7.5609	12	7	0	365	0	2	1
C-D	-88.0261	-44.1833	-327.35	-459.5594	90	33	5	14113	0	34	35
E-F	-61.5563	-46.3278	-332.291	-440.1752	86	17	5	14119	0	33	35

Interface residues

• A-B: ARG112A, ARG112B, ARG125A, ARG125B, ARG84A, ARG84B, ASN106A, ASN106B, ASN119A, ASN119B, ASN82A, ASN82B, ASP76A, ASP76B, ASP88A, ASP88B, ASP92A, ASP92B, GLN102A, GLN102B, GLN111A, GLN111B, GLN120A, GLN120B, GLN80A, GLN80B, GLU101A, GLU101B, GLU109A, GLU109B, GLU118A, GLU118B, GLU79A, GLU79B, GLU91A, GLU91B, GLY126A, GLY126B, ILE108A, ILE108B, ILE83A, ILE83B, ILE85A, ILE85B, ILE89A, ILE89B, ILE90B, LEU105A, LEU105B, LEU117A, LEU117B, LEU123A, LEU123B, LEU128A, LEU128B, LEU75A, LEU75B, LEU77A, LEU77B, LYS116A, LYS116B, LYS121A, LYS121B, LYS122A, LYS122B, PRO86A, PRO86B, SER127A, SER127B, SER81A, SER81B, SER87A, SER87B, THR110A, THR110B, THR113A, THR113B, TRP115A, TRP115B, TYR114A, TYR114B, TYR124A, TYR124B, TYR78A, TYR78B, VAL74A, VAL74B
• A-C: ARG112A, ARG84A, ASN82A, ASN95C, ASP88C, ASP92C, GLN111C, GLN80A, GLN96C, GLU118C, GLU91C, ILE83A, ILE89C, LEU117C, LEU77A, LYS116A, LYS121C, SER81A, THR110C, TRP115C, TYR107C, TYR114C, TYR78A
• A-D: ARG84A, ARG84D, ASN82A, ASN82D, GLN80A, GLN80D, GLU79A, GLU79D, ILE83A, ILE83D, SER81A, SER81D
• A-E: ARG125A, ARG125E, ASN106A, ASN106E, ASN119A, ASN119E, GLN102A, GLN102E, GLN111A, GLN111E, GLN120A, GLN120E, GLN96A, GLN96E, GLN99A, GLN99E, GLU103A, GLU103E, GLU109A, GLU109E, GLU118A, GLU118E, GLY126A, GLY126E, ILE108A, ILE108E, LEU105A, LEU105E, LEU117A, LEU117E, LEU123A, LEU123E, LEU98A, LEU98E, LYS116A, LYS116E, LYS121A, LYS121E, LYS122A, LYS122E, SER100A, SER100E, THR110A, THR110E, THR113A, THR113E, TRP115A, TRP115E, TYR107A, TYR107E, TYR114A, TYR114E, TYR124A, TYR124E, VAL104A, VAL104E
• A-F: ARG112F, ARG125F, ARG84F, ASN82F, ASN95A, ASP88A, ASP92A, GLN111A, GLN80F, GLN96A, GLU118A, GLU91A, ILE83F, ILE89A, LEU117A, LYS116F, LYS121A, LYS122A, SER81F, THR110A, TRP115A, TYR107A, TYR114A, TYR78F
• B-C: ARG125B, ARG125C, ASN106B, ASN106C, ASN119B, ASN119C, GLN102B, GLN102C, GLN111B, GLN111C, GLN120B, GLN120C, GLN96B, GLN96C, GLN99B, GLN99C, GLU103B, GLU103C, GLU109B, GLU109C, GLU118B, GLU118C, GLY126B, GLY126C, ILE108B, ILE108C, LEU105B, LEU105C, LEU117B, LEU117C, LEU123B, LEU123C, LEU98B, LEU98C, LYS116B, LYS116C, LYS121B, LYS121C, LYS122B, LYS122C, SER100B, SER100C, THR110B, THR110C, THR113B, THR113C, TRP115B, TRP115C, TYR107B, TYR107C, TYR114B, TYR114C, TYR124B, TYR124C, VAL104B, VAL104C
• B-D: ARG112D, ARG84D, ASN82D, ASN95B, ASP88B, ASP92B, GLN111B, GLN80D, GLN96B, GLU118B, GLU79D, GLU91B, ILE83D, ILE89B, LEU117B, LYS116D, LYS121B, SER81D, THR110B, TRP115B, TYR107B, TYR114B, TYR78D
• B-E: ARG112B, ARG84B, ASN82B, ASP88E, ASP92E, GLN111E, GLN80B, GLN96E, GLU118E, GLU79B, ILE83B, LEU117E, LYS116B, LYS121E, SER81B, THR110E, TRP115E, TYR107E, TYR114E, TYR78B
• B-F: ARG84B, ARG84F, ASN82B, ASN82F, GLN80B, GLN80F, GLU79B, GLU79F, ILE83B, ILE83F, SER81B, SER81F
• C-D: ARG112C, ARG112D, ARG125C, ARG125D, ARG84C, ARG84D, ASN106C, ASN106D, ASN119C, ASN119D, ASN82C, ASN82D, ASP76C, ASP76D, ASP88C, ASP88D, ASP92C, ASP92D, GLN102C, GLN102D, GLN111C, GLN111D, GLN120C, GLN120D, GLN80C, GLN80D, GLU101C, GLU101D, GLU103C, GLU109C, GLU109D, GLU118C, GLU118D, GLU79C, GLU79D, GLU91C, GLU91D, GLY126C, GLY126D, ILE108C, ILE108D, ILE83C, ILE83D, ILE85C, ILE85D, ILE89C, ILE89D, ILE90C, ILE90D, LEU105C, LEU105D, LEU117C, LEU117D, LEU123C, LEU123D, LEU128C, LEU128D, LEU75C, LEU75D, LEU77C, LEU77D, LYS116C, LYS116D, LYS121C, LYS121D, LYS122C, LYS122D, PRO86C, PRO86D, SER100D, SER127C, SER127D, SER81C, SER81D, SER87C, SER87D, THR110C, THR110D, THR113C, THR113D, TRP115C, TRP115D, TYR114C, TYR114D, TYR124C, TYR124D, TYR78C, TYR78D, VAL74C, VAL74D
• E-F: ARG112E, ARG112F, ARG125E, ARG125F, ARG84E, ARG84F, ASN106E, ASN106F, ASN119E, ASN119F, ASN82E, ASN82F, ASP76E, ASP76F, ASP88E, ASP88F, ASP92E, ASP92F, GLN102E, GLN102F, GLN111E, GLN111F, GLN120E, GLN120F, GLN80E, GLN80F, GLU101E, GLU101F, GLU109E, GLU109F, GLU118E, GLU118F, GLU79E, GLU79F, GLU91E, GLU91F, GLY126E, GLY126F, ILE108E, ILE108F, ILE83E, ILE83F, ILE85E, ILE85F, ILE89E, ILE89F, ILE90E, ILE90F, LEU105E, LEU105F, LEU117E, LEU117F, LEU123E, LEU123F, LEU128E, LEU128F, LEU75E, LEU75F, LEU77E, LEU77F, LYS116E, LYS116F, LYS121E, LYS121F, LYS122E, LYS122F, PRO86E, PRO86F, SER127E, SER127F, SER81E, SER81F, SER87E, SER87F, THR113E, THR113F, TRP115E, TRP115F, TYR114E, TYR114F, TYR124E, TYR124F, TYR78E, TYR78F, VAL74E, VAL74F