2B9P
50s ribosomal subunit from a crystal structure of the ribosome in complex with trnas and mrna with a stop codon in the a-site. this file contains the 50s subunit from a crystal structure of the ribosome in complex with trnas and mrna with a stop codon in the a- site and is described in remark 400.
Total interactions analyzed 465
Total true interactions 25
Strongest Interaction Chains Z-K
Int. Res. 16
Norm. En. per Res. -1.6683
Hub Node E(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
E-N 0.0 -4.3553 -1.5334 -5.8887 9 0 0 165 0 3 0
E-O 0.0 2.9767 -17.8821 -14.9054 15 0 0 585 0 4 4
E-T 0.0 0.0 -0.4963 -0.4963 7 0 0 89 0 1 0
E-5 0.0 0.0 -0.0003 -0.0003 2 0 0 1 0 0 1
F-W 0.0 0.0 -1.4178 -1.4178 5 0 0 162 0 0 1
F-U 0.0 0.0 -0.2792 -0.2792 6 0 0 121 0 0 3
G-S 0.0 3.4889 172.862 176.3509 14 34 0 1229 1 10 16
H-9 0.0 0.0 -0.035 -0.035 6 0 0 23 0 0 2
I-4 0.0 -3.6526 -4.103 -7.7556 22 0 0 503 0 11 8
N-U 0.0 0.0 -2.544 -2.544 10 0 0 247 0 4 1
N-9 0.0 0.0 -0.0016 -0.0016 2 0 0 1 0 5 1
O-T -23.0485 20.22 -23.1859 -26.0144 55 37 2 5937 0 22 22
P-8 0.0 2.2694 -5.8731 -3.6038 14 0 0 913 0 0 11
Q-Z -32.8349 11.7677 77.0485 55.9812 88 87 1 7650 0 19 21
Q-0 0.0 0.0 -6.2367 -6.2367 11 1 0 306 0 1 1
Q-K 0.0 0.0 -0.1604 -0.1604 3 0 0 31 0 0 0
S-0 0.0 1.5339 -11.881 -10.3471 28 0 0 908 0 2 9
W-R 0.0 0.0 -6.4899 -6.4899 16 0 0 446 0 5 7
W-5 -6.7093 12.0004 47.2978 52.5889 54 34 6 4979 0 13 26
X-2 -14.1962 -38.9239 14.6317 -38.4884 40 39 2 3493 4 11 16
Z-K 0.0 -0.8178 -25.8755 -26.6933 16 2 0 1138 0 4 4
R-5 -2.2756 3.7235 -14.7121 -13.2642 38 26 2 2691 0 9 13
U-V -212.3926 64.2391 1408.84 1260.6864 98 308 5 11851 0 26 58
U-5 0.0 0.0 -0.5052 -0.5052 9 0 0 129 0 0 5
6-8 0.0 0.772 -25.7607 -24.9887 21 3 0 1404 0 2 7