2B8K
12-subunit rna polymerase ii
Total interactions analyzed 66
Total true interactions 29
Strongest Interaction Chains C-L
Int. Res. 59
Norm. En. per Res. -4.261
Hub Node B(10)
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Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -393.218 -300.4298 -2278.28 -2971.9277 765 238 61 106610 27 251 228
A-C -14.4333 9.9834 -66.6775 -71.1273 50 8 0 3022 0 16 18
A-D 0.0 0.0 -8.0524 -8.0524 18 0 1 577 0 11 6
A-E -69.2349 -76.6175 -494.913 -640.7655 200 43 14 22662 7 77 59
A-F -80.4894 -52.6383 -485.008 -618.1358 176 41 16 21645 3 62 55
A-G 0.0 -64.4054 -100.439 -164.8444 66 2 4 4962 3 21 15
A-H -33.4889 -5.6405 -341.898 -381.0274 134 37 11 16017 1 35 34
A-I -64.7707 -20.0742 -353.722 -438.5669 137 23 11 15348 4 49 47
A-K -22.754 -35.5847 -243.741 -302.0797 89 18 8 9984 3 23 18
B-C -73.5978 -106.2481 -419.492 -599.3379 169 47 4 17540 8 53 60
B-D 0.0 0.0 -14.6001 -14.6001 31 6 1 1376 0 17 19
B-E 0.0 0.0 0.8991 0.8991 9 3 0 285 0 2 1
B-F 0.0 0.0 -12.2714 -12.2714 25 1 0 599 0 5 6
B-G 0.0 -3.276 -17.8092 -21.0852 29 0 0 1054 0 6 4
B-H 0.0 0.0 -0.251 -0.251 2 0 0 35 0 0 0
B-I -15.7168 -62.1673 -284.834 -362.7182 133 19 3 13501 2 53 50
B-J -27.8023 -26.3691 -383.73 -437.9014 138 35 6 17898 3 34 37
B-K -4.2219 -11.9376 -81.1885 -97.348 52 5 0 3286 2 16 18
B-L -51.712 -78.0094 -207.347 -337.0684 107 20 8 10679 8 45 45
C-H 0.0 -5.9145 -31.063 -36.9775 25 0 2 1557 0 8 7
C-J -66.9682 -34.0674 -226.788 -327.8236 107 36 10 12298 6 39 24
C-K -41.7875 -29.904 -406.424 -478.1155 152 39 17 21739 4 47 46
C-L -36.8194 -74.5092 -140.069 -251.3976 59 11 9 5867 7 23 15
D-G -37.8777 6.134 -444.173 -475.9167 194 52 20 22903 7 57 47
E-F -3.6101 -21.2976 -25.0782 -49.9859 20 3 0 1303 1 5 6
F-G -2.2932 -11.8207 -99.7921 -113.906 52 9 1 4753 1 8 7
H-K 0.0 0.0 -29.0127 -29.0127 27 0 0 1762 0 5 4
J-L -5.8841 0.0 -9.6847 -15.5689 9 0 0 531 0 1 1
K-L 0.0 8.294 -1.1578 7.1362 5 0 0 152 0 2 2