2B64

30s ribosomal subunit, trnas, mrna and release factor rf1 from a crystal structure of the whole ribosomal complex. this file contains the 30s subunit, trnas, mrna and release factor rf1 from a crystal structure of the whole ribosomal complex". the entire crystal structure contains one 70s ribosome, trnas, mrna and release factor rf1 and is described in remark 400.

• Total interactions analyzed: 300
• Total true interactions: 28
• Strongest Interaction:
  • Chains: F-R
  • Int. Res.: 80
  • Norm. En. per Res.: -3.8195
• Hub Node: C(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
B-C	0.0	0.0	-0.0092	-0.0092	3	0	0	11	0	1	0
B-E	0.0	0.0	-0.4556	-0.4556	4	0	0	67	0	0	3
B-H	0.0	-39.6134	-53.1662	-92.7796	27	3	0	2063	2	14	14
C-D	0.0	0.0	-0.2569	-0.2569	5	0	0	60	0	0	7
C-E	-5.642	-30.9818	-22.7091	-59.3328	19	3	0	1047	1	5	6
C-J	-6.8118	3.2846	-76.6288	-80.156	56	8	1	3243	0	16	22
C-N	0.0	2.2299	-115.537	-113.3071	67	30	2	7906	0	16	41
D-E	-14.5955	-4.8066	-41.1647	-60.5668	43	4	0	2216	3	8	11
E-H	-27.1062	-36.8866	-106.858	-170.8508	61	17	3	5441	4	36	41
F-O	0.0	0.0	-6.198	-6.198	7	0	0	353	0	7	4
F-R	-52.1985	-25.6797	-227.685	-305.5632	80	23	6	10053	2	14	20
G-I	0.0	4.7387	-39.022	-34.2833	43	1	4	2401	0	4	10
G-K	-4.7118	0.0	-52.2543	-56.9661	28	7	3	2185	0	2	6
H-L	0.0	0.0	-6.039	-6.039	10	0	0	481	0	0	1
H-Q	0.0	1.0381	-23.2455	-22.2074	14	1	0	1073	0	1	8
I-J	0.0	0.0	-29.5445	-29.5445	20	13	0	1492	0	5	17
I-M	0.0	2.3869	-1.8018	0.5852	5	0	0	224	0	0	4
I-N	0.0	0.0	-8.0487	-8.0487	8	0	0	372	0	0	0
J-N	-39.218	-2.3825	-161.366	-202.9666	55	56	5	9067	2	16	37
K-R	-23.101	-16.6182	-59.5173	-99.2365	37	6	1	2875	2	13	15
L-Q	-5.1388	0.0	-47.7523	-52.8911	20	5	4	1989	0	0	7
L-Y	0.0	0.0	-1.1428	-1.1428	11	0	0	227	0	0	0
M-S	-2.3711	11.7822	-42.0827	-32.6716	45	6	1	2598	0	6	19
M-U	0.0	1.0346	-3.1837	-2.1492	11	0	0	359	0	3	8
M-Y	0.0	0.0	24.4559	24.4559	23	21	0	831	0	0	0
N-S	0.0	0.0	-0.4809	-0.4809	7	0	0	91	0	2	3
O-Q	0.0	0.0	-1.0137	-1.0137	11	0	0	148	0	9	7
S-U	0.0	0.0	-0.0053	-0.0053	2	0	0	5	0	0	0

Interface residues

• B-C: ARG130B, ARG179C, VAL207C
• B-E: ARG64E, LYS106B, THR103B, TYR60E
• B-H: ALA177B, ARG175B, ARG178B, ARG30B, ARG53B, ARG68H, ARG69H, ARG75H, ASP195B, ASP198B, ASP73H, GLN70H, GLU22H, GLY71H, ILE182B, LEU180B, LEU196B, LYS179B, LYS27B, PHE181B, PRO183B, PRO72H, PRO74H, TYR199B, TYR20H, VAL184B, VAL197B
• C-D: ALA129C, ARG127C, ARG132C, ARG47D, LYS46D
• C-E: ALA168C, ALA169C, ALA48E, ALA54E, ARG131C, ARG132C, ARG15E, ARG164C, GLN56E, GLU166C, GLU50E, LEU53E, LYS135C, PHE26E, PHE28E, PRO49E, PRO52E, TRP167C, VAL51E
• C-J: ALA24C, ALA60C, ALA61C, ALA65C, ARG21C, ARG43J, ARG45J, ARG51J, ARG59C, ARG60J, ARG66J, ARG9J, ASN3C, ASN69J, ASP12J, ASP17C, ASP89J, GLN28C, GLU58C, GLU61J, GLU64J, GLU95J, GLY10J, GLY25C, GLY2C, GLY52J, GLY93J, GLY9C, HIS56J, HIS68J, HIS6C, ILE5C, ILE96J, LEU12C, LEU16J, LEU33C, LEU65J, LEU8J, LEU90J, LYS26C, LYS4C, LYS7J, PHE10C, PHE11J, PHE47J, PHE63J, PRO91J, SER59J, THR15J, THR67J, THR92J, TRP18C, TRP22C, TYR23C, TYR29C, VAL94J
• C-N: ALA24C, ALA48N, ARG11C, ARG16C, ARG21C, ARG26N, ARG30C, ARG35N, ARG38C, ARG40C, ARG45N, ARG57N, ARG59C, ASN3C, ASP17C, ASP36C, GLN28C, GLN37C, GLN52N, GLU19C, GLU35C, GLU44C, GLU46N, GLU58C, GLY13C, GLY25C, GLY38N, GLY51N, GLY55N, GLY9C, HIS31C, HIS49N, HIS6C, ILE14C, ILE57C, ILE5C, ILE8C, LEU12C, LEU178C, LEU32C, LEU33C, LEU34C, LEU39N, LEU47N, LEU53N, LYS26C, LYS27C, LYS4C, LYS50N, LYS58N, LYS9N, PHE10C, PHE186C, PHE36N, PHE37N, PRO54N, PRO7C, SER20C, SER60N, TRP18C, TRP22C, TYR184C, TYR23C, TYR29C, VAL25N, VAL55C, VAL56N
• D-E: ALA102E, ALA104E, ALA108E, ALA95E, ARG107E, ARG209D, ARG37E, ARG50D, ARG57D, ASN73E, ASP117E, ASP53D, GLN201D, GLU111E, GLU205D, GLY103E, GLY87D, GLY90D, GLY97E, GLY99E, ILE101E, ILE11E, ILE13E, ILE204D, LEU119E, LEU12E, LEU202D, LYS86D, LYS9E, MET10E, PRO96E, SER208D, SER83D, SER91D, THR116E, THR89D, THR98E, TYR54D, VAL100E, VAL105E, VAL115E, VAL56D, VAL88D
• E-H: ALA40H, ALA94E, ARG102H, ARG104H, ARG105H, ARG122H, ARG140E, ARG143E, ARG150E, ARG152E, ARG41H, ARG69H, ARG84H, ASP147E, GLN141E, GLN70H, GLN72E, GLN78H, GLU149E, GLU42H, GLU77H, GLU79E, GLU81E, GLY106H, GLY108H, GLY154E, GLY43H, GLY66H, HIS78E, HIS81H, HIS82H, ILE109H, ILE38H, ILE45H, ILE76E, ILE80E, ILE80H, LEU107H, LEU142E, LEU151E, LEU39H, LEU91E, LYS145E, LYS153E, LYS46H, LYS64H, LYS92E, PHE44H, PRO67H, PRO76H, PRO77E, PRO93E, THR144E, TRP138H, TYR65H, VAL103H, VAL137H, VAL148E, VAL79H, VAL82E, VAL90E
• F-O: ARG2F, ASP70F, GLU69F, ILE3O, MET1F, PRO2O, THR4O
• F-R: ALA101F, ALA24R, ALA49F, ALA73R, ALA99F, ARG32R, ARG35R, ARG46F, ARG47F, ARG72R, ARG74R, ARG87F, ASN100F, ASN36R, ASN7F, ASP30R, ASP33R, GLN57F, GLN64F, GLN94F, GLU28R, GLU38R, GLU41F, GLU42F, GLU5F, GLU62R, GLU83R, GLU95F, GLY27R, GLY58F, GLY77R, ILE52F, ILE65R, ILE75R, ILE8F, LEU26R, LEU31R, LEU43F, LEU45F, LEU48F, LEU58R, LEU61F, LEU66R, LEU76R, LEU78R, LEU79R, LEU98F, LYS21R, LYS23R, LYS39F, LYS41R, LYS61R, LYS68R, LYS71R, LYS92F, MET89F, PHE29R, PHE60F, PHE81R, PHE97F, PRO51F, PRO56F, PRO80R, PRO96F, SER59R, SER93F, THR25R, THR69R, THR82R, TRP62F, TYR34R, TYR50F, TYR63F, VAL22R, VAL37R, VAL6F, VAL88F, VAL90F, VAL91F, VAL9F
• G-I: ALA39G, ALA40G, ALA43I, ALA45I, ALA46I, ARG107I, ARG10G, ARG10I, ARG41G, ARG42I, ARG51I, ASN28G, ASN37G, ASP105I, ASP15G, GLN11G, GLN13G, GLN38I, GLU48I, GLY100I, GLY34G, GLY39I, ILE27G, ILE42G, ILE74I, LEU12G, LEU16G, LEU38G, LEU40I, LEU47I, LEU99I, LYS36G, LYS70I, LYS78I, PHE43G, PRO14G, SER71I, THR24G, TYR18G, TYR44G, VAL17G, VAL41I, VAL44I
• G-K: ALA147G, ALA150G, ALA152G, ALA60K, ALA61K, ALA89K, ARG149G, ARG155G, ARG54K, ASN148G, GLN62K, GLN86G, GLN93K, GLU146G, GLY56K, GLY90K, HIS153G, LEU63K, LYS51K, LYS55K, PRO58K, SER53K, THR57K, TYR151G, TYR154G, TYR50K, TYR59K, TYR85G
• H-L: ARG91H, ARG92H, ASN8L, GLY90H, ILE7L, LEU10L, LYS88H, PRO89H, THR6L, VAL11L
• H-Q: ARG91H, ARG92H, GLY33Q, GLY90H, HIS29Q, LEU31Q, LYS34Q, LYS88H, PRO28Q, PRO89H, TYR32Q, TYR94H, VAL35Q, VAL93H
• I-J: ALA122I, ARG111I, ARG46J, ARG51J, ARG60J, ASP58J, GLU61J, GLY115I, HIS117I, HIS62J, ILE50J, LYS112I, LYS113I, LYS116I, LYS57J, PRO123I, SER59J, THR48J, TYR114I, VAL49J
• I-M: ARG125M, ARG128I, LYS126M, LYS127I, SER126I
• I-N: ALA59N, ARG111I, GLU110I, LYS112I, LYS113I, LYS58N, SER60N, TRP61N
• J-N: ALA48N, ALA59N, ARG29N, ARG41N, ARG45J, ARG45N, ARG46J, ARG51J, ARG57N, ARG60J, ARG66J, ASP12J, CYS27N, CYS40N, CYS43N, GLU46N, GLU61J, GLU64J, GLY10J, GLY51N, GLY52J, GLY55N, GLY93J, HIS13J, HIS49N, HIS56J, HIS62J, HIS68J, ILE42N, ILE50J, LEU44N, LEU47N, LEU53N, LEU65J, LYS50N, LYS55J, LYS58N, PHE11J, PHE36N, PHE37N, PHE47J, PHE54J, PHE63J, PRO53J, PRO54N, SER32N, SER59J, SER60N, THR48J, THR67J, TRP61N, TYR34N, VAL44J, VAL49J, VAL56N
• K-R: ARG74R, ARG85K, ARG87R, ARG91K, ASP110K, ASP111K, ASP81K, GLN99K, GLU46R, GLU83R, GLU92K, GLY48R, GLY86K, HIS116K, ILE108K, ILE83K, ILE95K, LEU85R, LYS106K, LYS49R, LYS84R, LYS88R, PHE81R, PRO113K, PRO115K, PRO80R, SER107K, THR112K, THR47R, THR82R, THR87K, TYR20K, VAL109K, VAL114K, VAL82K, VAL84K, VAL86R
• L-Q: ARG12L, ARG15L, ARG38Q, ASN8L, GLN9L, GLY14L, GLY33Q, HIS29Q, ILE36Q, ILE7L, LEU10L, LEU31Q, LYS13L, LYS34Q, PRO30Q, PRO5L, THR6L, TYR32Q, VAL11L, VAL35Q
• L-Y: ALA51L, ARG298Y, GLU297Y, GLU300Y, GLY296Y, LEU52L, LYS301Y, SER299Y, SER50L, THR295Y, THR44L
• M-S: ALA75S, ARG102M, ARG104M, ARG36S, ARG3S, ARG78S, ARG80M, ARG81S, ARG88M, ARG91M, ARG94M, ARG99M, ASN53S, ASN65S, ASN77M, CYS86M, GLN101M, GLU73S, GLY100M, GLY72S, GLY85M, GLY89M, GLY95M, HIS69S, ILE62S, ILE84M, LEU71S, LEU81M, LEU90M, LEU96M, LYS111M, LYS70S, MET66S, PHE74S, PRO2S, PRO76S, THR103M, THR63S, THR77S, TYR61S, TYR80S, TYR87M, VAL51S, VAL60S, VAL98M
• M-U: ALA28M, ARG29M, ARG7U, GLY26M, ILE25M, LYS20U, LYS27M, LYS31M, THR20M, THR8U, TYR21U
• M-Y: ALA120Y, ALA121Y, ALA123M, ALA124Y, ARG125Y, ASN129Y, ASP126Y, ASP151Y, GLU119Y, GLY153Y, GLY154Y, LEU122Y, LEU152Y, LYS120M, LYS121M, LYS122M, MET130Y, PHE123Y, PHE128Y, PHE155Y, PRO149Y, THR150Y, VAL185Y
• N-S: ARG19N, ASP12S, HIS14S, LYS15N, PHE10S, PHE16N, SER35S
• O-Q: ALA105Q, ARG64O, ARG68O, ARG72O, ARG88O, ASP83Q, GLN71O, GLU86Q, ILE90Q, MET82Q, PRO75O
• S-U: ARG6U, PRO2S